Methanosarcina hadiensis: RSJ42_09315
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Entry
RSJ42_09315 CDS
T10775
Symbol
rrp4
Name
(GenBank) exosome complex RNA-binding protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
mhab Methanosarcina hadiensis
Pathway
mhab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSJ42_09315 (rrp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhab03019
]
RSJ42_09315 (rrp4)
Messenger RNA biogenesis [BR:
mhab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
RSJ42_09315 (rrp4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
RSJ42_09315 (rrp4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
ECR1_N
KH_1
S1_RRP4
S1
RRP40_S1
KH_2
Motif
Other DBs
NCBI-ProteinID:
XMB87535
LinkDB
All DBs
Position
complement(2212607..2213389)
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AA seq
260 aa
AA seq
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MDKKIVIPGDLLSEDVKKSGYGTYVKNDKIYSSLCGIESLKEDKVGVIPLAGAYIPSVND
VVIGIVIVVTPSNWILDIAAPYDGLLHVSEYPRRVESREMPEILDVGDSVILRVRDVDSS
MKIELALRDPNLHKLRTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWI
DGKDDDIELLSKALRKIEAEAQRSGLTDRIYNFLKNERMKQKESKPVKFFKNEKKGVNVA
KEDHSEDIYRKIDVLLDPKN
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaaatagtgatccctggtgacctgttatccgaggacgtgaaaaagtccgga
tacgggacgtatgtcaagaacgacaagatctattcttcgctttgcggcattgaaagcctc
aaagaagataaagttggagtgatcccacttgcgggagcgtatatcccctcagtgaatgat
gtggtgatagggatcgttattgtggttactccatccaactggatactggatattgcagct
ccttatgacggtctgcttcatgtgtccgagtatccgagaagagtcgaatcccgagaaatg
cctgaaattctggacgtaggcgactctgttattctcagggtaagggatgtggacagctcc
atgaaaatcgagcttgccctgagagacccgaaccttcataaactcagaacaggccagatt
gttgaagttgagcctgtgaaagttccccgtgtaataggacacggcggttccatgatctca
atgctgaagaaagagacaaactgcagcatttttgtaggccagaacggcagaatatggatc
gatgggaaggatgacgatatagagcttttgagtaaggctctccggaaaatagaagctgaa
gcccagcgttccgggttgacagaccggatctacaattttttgaaaaatgaacggatgaaa
cagaaagagtccaagcccgttaaattttttaaaaatgagaagaaaggtgtgaatgtggca
aaggaagatcattccgaagatatataccggaagatcgatgtactgctggaccccaagaat
tga
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