Methanosarcina hadiensis: RSJ42_11225
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Entry
RSJ42_11225 CDS
T10775
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mhab Methanosarcina hadiensis
Pathway
mhab04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mhab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
RSJ42_11225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhab03019
]
RSJ42_11225
03009 Ribosome biogenesis [BR:
mhab03009
]
RSJ42_11225
04131 Membrane trafficking [BR:
mhab04131
]
RSJ42_11225
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mhab04147
]
RSJ42_11225
Messenger RNA biogenesis [BR:
mhab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
RSJ42_11225
Ribosome biogenesis [BR:
mhab03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
RSJ42_11225
Membrane trafficking [BR:
mhab04131
]
SNARE
SNARE associated proteins
Others
RSJ42_11225
Autophagy
Aggrephagy
Other aggrephagy associated proteins
RSJ42_11225
Exosome [BR:
mhab04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
RSJ42_11225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_5
CDC48_2
AAA_16
AAA_22
TIP49
AAA_2
AAA_14
AAA_25
IstB_IS21
AAA_33
AAA_28
AAA_7
nSTAND3
RNA_helicase
Mg_chelatase
Sigma54_activat
AAA_18
Parvo_NS1
ATPase
AAA_17
NPHP3_N
DUF5906
AAA_24
Zeta_toxin
PhoH
SLFN-g3_helicase
ABC_tran
AAA_19
DUF815
TsaE
bpMoxR
NB-ARC
Vps4_C
ATPase_2
ResIII
AAA_lid_PRS2_C
Motif
Other DBs
NCBI-ProteinID:
XMB87898
LinkDB
All DBs
Position
2663637..2666015
Genome browser
AA seq
792 aa
AA seq
DB search
MEEIQLKVEKAYPIDLGRGIIRLDPTALLKLQLSPGDIVEIRGKKKTTAKVWRADRQDWE
QGIVRIDNFIRQNAGVSIGEKVTIKKVDAPEAKKLILALPESMTQGGPELQFGEHANEII
KRHILKRPVFRGDIIPIINSMSQPMTESLTTSQVIPLVAVETDPGNTIVLITETTNIELR
KKPVQGYEKATRGVTTYEDIGGLGDEIMRVREMIEMPMKHPELFAHLNIEPPKGVILYGP
PGTGKTLIAKAVANESGASFHYIAGPEIVGKFYGESEERLRKIFEEATQDAPSVIFIDEI
DSIAPKRENVTGEVERRVVAQLLTLLDGMEERGQVVVIGATNRVDAIDPALRRPGRFDRE
IHIGVPDTKDRYEILQIHTRGMPIEKDEELEVTEPQAGTEIESADLIEAGPEIGMDFDET
AMEREKKEKTNLYLKSLAERTQGFVGADLLALVQEAAMRCLRENLPDLDLEIDTIPPERL
EKIIVTKKNFEDALMEAEPSALREIFVEMPSVGWDDVGGLDEAKHSIIEAVEWPIKNPEK
FVKMGIKAPKGILLYGPPGTGKTLIAQAVARESNANFISVKGPEMFSKWLGESEKAIRET
FKKARQVSPCVVFFDEIDSIAAMQGMESTDSRTSERVLNQLLTEMDGLETLKDVVIIAAT
NRPNLLDPAILRPGRFDRLVYVGAPDRKGRLRIFRIHTQNIPLAENVDIEELASITEGYV
GADIEAVCREAVMFALRENFDVEAIEMRHFREALKKVKPTITENIAQFYEKIEEQFKGGQ
RPVETAGLIGYR
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaatacagttgaaggtcgaaaaggcgtatccgattgaccttggaagaggaatt
atccggcttgacccaacagcactactgaagcttcagctctcaccaggcgacattgtggag
ataaggggaaagaaaaaaaccacagcaaaggtatggagagcagacaggcaggattgggaa
caggggattgtgcgcattgataatttcatcaggcaaaacgccggggtttccataggggag
aaagtaaccattaaaaaagtagatgctccggaagcaaagaaactaattctggcgcttccg
gaaagcatgacgcagggaggacctgagctgcagtttggggaacatgcaaatgagatcata
aaaaggcatatcctgaaaaggcctgtattcaggggagacataattccgattataaactca
atgtctcagccaatgacggaatccctgactacaagccaggtaatccctctggttgctgta
gagacagaccccggaaacacaattgtccttatcacggaaaccactaacattgagctcagg
aaaaagcctgtacagggctatgagaaggcaacaaggggcgttaccacctacgaagacata
ggaggtctgggcgacgagatcatgcgcgtccgcgaaatgattgagatgcccatgaagcac
cctgaactctttgcccaccttaacatagagcctccgaaaggagttatcctctacggccct
cccggaaccggaaaaaccctgattgcaaaagctgtggcaaacgagtccggggcaagcttc
cactacattgccggccctgagattgtaggaaagttctacggggaaagtgaagaaaggtta
agaaaaatctttgaagaggcaacccaggacgctccttcggttatattcattgatgagatc
gactccattgccccgaaaagggaaaacgtgacaggagaagtggaaaggcgagtggttgcc
cagctcctgacacttcttgacggaatggaggaaagggggcaggttgtggtcataggggct
accaaccgtgtggacgctatcgaccctgcactccggagaccaggccgctttgatagggaa
atccatatcggagtaccggacaccaaagacaggtacgagatcctgcaaatccacacaagg
ggcatgccgattgaaaaagacgaagagttagaggtaaccgaaccccaggcgggaactgag
attgaatctgcagatctgatcgaagccggaccggagatcgggatggatttcgatgaaact
gccatggagagagaaaagaaagagaagacaaacctgtacctcaagtccctggccgagagg
acgcagggctttgtaggagcagaccttctggctctcgtgcaggaagcagcaatgaggtgt
ctcagggaaaacctcccggaccttgacctggaaatagatacaattcctccggaaagactg
gagaagatcattgtcaccaaaaagaactttgaagatgcactgatggaagccgaaccttca
gccctgagagagatttttgtcgaaatgccgtccgttggctgggatgatgtgggaggcctt
gatgaagcaaagcactcaatcatcgaagctgttgaatggcctattaaaaacccggaaaaa
tttgtcaagatgggcataaaggctccaaaggggatcctgctatacggccctccgggaacc
ggaaagactcttatagcccaggctgttgccagagagtcaaatgccaatttcataagcgtc
aaagggccggagatgttctcgaaatggcttggggagtcagaaaaagcaattcgggaaacc
ttcaagaaagcaaggcaggtctctccctgtgttgtcttctttgatgagatcgactctatt
gcagccatgcagggcatggaatcaactgacagccggacttcggaaagggtgcttaaccag
cttctgaccgaaatggacgggcttgagactcttaaagatgtggtcataattgccgcaact
aaccgccctaacctgcttgaccctgcaatcctgcgccctggccgttttgacaggctggtt
tatgtaggggcgcctgaccgtaagggcaggttgaggatcttcaggatacacacacagaat
atacctcttgcagagaatgttgacattgaggaacttgccagcataacggaaggatatgtg
ggtgctgacatagaagcagtatgcagagaggctgtaatgtttgccctgagagagaacttc
gatgttgaagcgattgagatgaggcatttcagggaagctcttaagaaagtaaaacccaca
attaccgagaatatcgcccagttctatgagaagatagaggaacagttcaaaggaggacag
agaccggtagagacagccggattgatcggatacaggtaa
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