Methanosarcina hadiensis: RSJ42_11285
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Entry
RSJ42_11285 CDS
T10775
Name
(GenBank) deoxyribonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
mhab Methanosarcina hadiensis
Pathway
mhab03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mhab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RSJ42_11285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhab03400
]
RSJ42_11285
Enzymes [BR:
mhab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
RSJ42_11285
DNA repair and recombination proteins [BR:
mhab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
RSJ42_11285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
UvdE
NADAR-DarT1
DUF6005
Motif
Other DBs
NCBI-ProteinID:
XMB87910
LinkDB
All DBs
Position
2674748..2675581
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AA seq
277 aa
AA seq
DB search
MLSEKLIFGTAGVPKSTKASNSIAGIERVRELGLGCMELEFVQGVRMSEKGAANVLEIAR
KENIALSVHAPYYINLNSPEEEKLKASMERIYQSARIGSLCGAESIVLHAAFYQKNSKET
VYENVSKALQELTGQLRDEDIHAVLRPETMGKTTQFGTLEEVLSLSEEIEGVMPCLDFSH
MHAREGKENSYPEFMSILSKVENSLGKQGLENMHMHVSGIEYDRNGEKRHLTLEESDFNY
PELLRALKEFGVKGLVICESPIMEEDALLLKKTYMEL
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgttatctgaaaaacttatttttgggacagcaggagttcctaaaagcacaaaagccagc
aatagcattgcagggattgagcgggttagagaactgggactcggctgcatggaacttgag
tttgtgcagggagtgcgcatgagtgaaaaaggggcagcaaatgttcttgaaatagccaga
aaagaaaacatagccctgagcgtccacgccccttattacattaacctgaactccccggaa
gaagaaaaattaaaagccagcatggaaaggatctaccagtctgcaaggataggcagcctt
tgcggagcagaatcaattgtactgcatgcagccttttaccagaaaaacagcaaagaaaca
gtctatgagaatgtctcaaaagcccttcaggagcttacgggacagctcagggatgaagac
atccatgcagtcctccgcccggaaaccatgggcaaaactacgcagtttgggacgcttgaa
gaagtgctctccttaagcgaagaaatcgaaggggttatgccctgcctagacttttcccat
atgcatgcaagggaaggaaaagaaaattcctatcccgagtttatgtcaatcctctcaaaa
gtagaaaactcactcgggaaacaggggcttgaaaatatgcacatgcatgtctcgggaata
gaatacgaccggaacggggaaaaaaggcatctgactcttgaagaatccgatttcaattac
cctgaactcctgagagccctcaaagaatttggtgttaaagggcttgtcatctgcgaaagc
cctatcatggaagaagatgcactcctgctaaaaaagacttacatggaattataa
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