Methanosarcina hadiensis: RSJ42_12885
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Entry
RSJ42_12885 CDS
T10775
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mhab Methanosarcina hadiensis
Pathway
mhab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSJ42_12885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhab03019
]
RSJ42_12885
03009 Ribosome biogenesis [BR:
mhab03009
]
RSJ42_12885
Enzymes [BR:
mhab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RSJ42_12885
Messenger RNA biogenesis [BR:
mhab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RSJ42_12885
Ribosome biogenesis [BR:
mhab03009
]
Prokaryotic type
rRNA helicases
RSJ42_12885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
ERCC3_RAD25_C
CMS1
Cas3-like_C_2
AAA_30
HAUS5
Motif
Other DBs
NCBI-ProteinID:
XMB88212
LinkDB
All DBs
Position
3022119..3023873
Genome browser
AA seq
584 aa
AA seq
DB search
MEKLAKFKALGLSDSTLKALKKKGFEEPTPIQEKVIPLFLKGESDIIGQAQTGTGKTTAF
GAPIIEKIPEKSGHVQAIILTPTRELAIQVSEELNSIKGDKKLYIVPIYGGQSMTQQLRV
LKSGVDIVVGTPGRVIDHLERKSLNLEHIAYFVLDEADEMLNMGFIDDIKEILKATGPNK
RMLFFSATMPKAILGIVKKHMQNYEHITIEKEELTETLTEQIYFEVKESDKFEALCRIID
IEDEFYGLVFCRTKTDTSQLAQKLSDRGYLADALHGDLSQQEREKILNKFRKQKINILAA
TDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIK
KTSNSEMKKGRIPEIKDVIKAKRARVRAELEDTIKTEEYGECLEMSEKLLEEYPAEKILA
ALLKYTFKDKFDESMYTEISSPSSYVDRKGKSRLFIAMGKADGMTPDKLSYFIQEELGDG
ELRVRDAEIFPHFSFVTLPFAQAEALIEIFKNKRRGSKPFVELAQKSRGRSSKDSGEARS
DNRGNSRGNSRGGESRGDSRRDSRSSKGAGYTRSSKGTKKKDSY
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagcaaaatttaaggcacttgggctctcggacagtacattgaaagccctc
aaaaagaaaggttttgaagaaccaaccccgattcaggaaaaggttattccgctttttttg
aaaggtgaatcagacattataggtcaggctcagacaggtactggaaagaccacagccttc
ggagcccccatcatagaaaaaattcctgagaaatcaggacatgtccaggcaataatcctg
acccctacaagggaacttgcaattcaggtctcggaagaacttaactccataaaaggagac
aaaaaactgtatatagtccctatatatggcggacagtccatgacccagcagcttcgcgtg
ctgaaatccggagtggacattgttgtaggaactccagggagggtcattgaccatcttgaa
agaaagagcctgaacctcgagcatatagcttatttcgtgcttgatgaagccgacgaaatg
cttaatatgggcttcattgacgacataaaagagatcttaaaggcaacaggcccgaataaa
aggatgcttttcttttcagccacaatgccaaaagcgattcttggaattgtaaagaagcac
atgcagaactacgagcatattacgattgagaaagaggagcttacagaaaccctgaccgaa
cagatctatttcgaggttaaggaaagcgataagttcgaagccctctgcaggattatcgat
attgaggacgaattctacgggctcgtgttctgccggacaaagactgacaccagccagctt
gcccagaaactgagcgacaggggttatttagccgatgcccttcatggggacctctcccag
caggaacgcgaaaaaatccttaacaagttcaggaagcagaagataaacatcctcgcagca
accgatgtcgcagcaagaggcatcgacattatggacctgacccatgtcattaactattcc
ctgcctcaggaccctgagtcctatgtgcacaggataggaaggacaggaagggcaggtaaa
cagggaactgctattacctttgttacatccactgaattcagaaggctcacttacattaaa
aagacttcaaattccgaaatgaagaaaggccgaatccctgaaataaaagatgtaattaaa
gccaaaagggcgagagtaagagcagagcttgaagataccataaaaactgaagagtacggg
gaatgccttgaaatgagtgaaaagctccttgaggaatatcccgcagaaaagattctggct
gccctactgaagtatacctttaaagacaagttcgacgagagcatgtatactgaaatctcc
agccccagttcctatgttgacaggaaaggcaagtcaaggctctttatagccatgggtaaa
gccgatggcatgactccggacaaattgtcatatttcattcaggaagaactcggggacggc
gaactcagagtaagggatgcagaaattttcccgcatttctccttcgtaaccctaccattt
gcccaggctgaagccctgatcgaaatcttcaaaaacaagaggagaggaagcaaacccttc
gtggaactagcccagaaatccagaggaagaagctcaaaggattcaggagaggccagaagt
gataaccggggcaactccagaggcaattccagaggcggcgaatccagaggggattctcgg
agagattcccgcagctcaaaaggtgcaggctacacaagaagttctaaaggcacaaaaaag
aaagactcttattaa
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