KEGG   Methanosarcina hadiensis: RSJ42_13890
Entry
RSJ42_13890       CDS       T10775                                 
Symbol
fen
Name
(GenBank) flap endonuclease-1
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
mhab  Methanosarcina hadiensis
Pathway
mhab03030  DNA replication
mhab03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:mhab00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RSJ42_13890 (fen)
   03410 Base excision repair
    RSJ42_13890 (fen)
   03450 Non-homologous end-joining
    RSJ42_13890 (fen)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mhab03032]
    RSJ42_13890 (fen)
   03400 DNA repair and recombination proteins [BR:mhab03400]
    RSJ42_13890 (fen)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mhab04147]
    RSJ42_13890 (fen)
DNA replication proteins [BR:mhab03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    RSJ42_13890 (fen)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     RSJ42_13890 (fen)
DNA repair and recombination proteins [BR:mhab03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     RSJ42_13890 (fen)
Exosome [BR:mhab04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   RSJ42_13890 (fen)
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc RuBisCO_large HHH_5
Other DBs
NCBI-ProteinID: XMB88397
UniProt: A0ACH3WDI8
LinkDB
Position
complement(3241676..3242692)
AA seq 338 aa
MGTDIGDLLQKRKIELSDLSSQVIAVDAFNTLHQFLSIIRQRDGSPLVNSSGKVTSHLSG
LLYRTASLVEAGIKPVFVFDGKPPEMKSQTLNKRKEVRESSREKWEYAKKEGDLEAAYKY
AQASSKVDQGIIEDSKHLLGVMGIPWIQAPCEGEAQAAHMVLKKDADYVASQDYDSFLFG
APAVIRNLAVTGKRKLPGKNVYVDVELEMIELEETLQALGISRDQLIDIAICVGTDYNKG
LEKVGPKTALKLIKKHGNIHAVLREKGVEIEALDSIKELFTHPDVTDNYEIKWGKPDSER
LITFLCEENDFSVERVEKAAERLKAASGARQRTLDQWF
NT seq 1017 nt   +upstreamnt  +downstreamnt
atgggtacagatataggagatctgctccagaaaagaaaaatagagctttccgatctctca
agccaggtgattgcagttgacgcatttaataccctgcaccagtttttgagcattattcgc
cagagagacggaagtcctctggttaattcgagcgggaaagtaacttctcacctctccggg
cttctttaccgcacagccagtctggttgaagcaggcataaaacctgttttcgtttttgat
ggcaagccccctgaaatgaaatcccaaaccttgaataaaaggaaagaagtaagggaatcg
tcccgggaaaaatgggaatatgcaaaaaaagaaggggatcttgaagctgcctataaatat
gcccaggcttcttcaaaggttgaccagggcattattgaggattccaaacatcttctcggt
gtgatgggcattccatggatacaggctccctgtgaaggggaggcacaggctgcgcatatg
gtcctaaaaaaggatgcggattatgttgcttcccaggactatgactctttccttttcgga
gctccagctgttatccgcaatctggctgttactggcaaacgaaagcttcctggaaagaat
gtatacgttgatgttgaacttgaaatgattgaactggaggaaacgctgcaggcgctggga
atcagcagggaccagctaatagatatcgcaatctgcgtgggtacggattataacaaagga
ctggagaaagtaggtcccaagacagctcttaaattgattaaaaagcatgggaatattcat
gcagttctccgggagaaaggggtagagatcgaggctctggacagcataaaggaacttttt
acccatcctgacgttacggataactatgaaatcaaatgggggaagccggattccgaaaga
ctaataacgtttctgtgcgaggaaaatgacttctccgtagaaagggtagaaaaagctgca
gagcgccttaaagcggcttcaggggcaagacagagaactctcgaccagtggttctga

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