Methanosarcina hadiensis: RSJ42_15900
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Entry
RSJ42_15900 CDS
T10775
Name
(GenBank) OB-fold nucleic acid binding domain-containing protein
KO
K07466
replication factor A1
Organism
mhab Methanosarcina hadiensis
Pathway
mhab03030
DNA replication
mhab03420
Nucleotide excision repair
mhab03430
Mismatch repair
mhab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mhab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RSJ42_15900
03420 Nucleotide excision repair
RSJ42_15900
03430 Mismatch repair
RSJ42_15900
03440 Homologous recombination
RSJ42_15900
03460 Fanconi anemia pathway
RSJ42_15900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mhab03000
]
RSJ42_15900
03032 DNA replication proteins [BR:
mhab03032
]
RSJ42_15900
03400 DNA repair and recombination proteins [BR:
mhab03400
]
RSJ42_15900
Transcription factors [BR:
mhab03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
RSJ42_15900
DNA replication proteins [BR:
mhab03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
RSJ42_15900
DNA repair and recombination proteins [BR:
mhab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
RSJ42_15900
MMR (mismatch excision repair)
RSJ42_15900
DSBR (double strand breaks repair)
HR (homologous recombination)
RSJ42_15900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
OB_Ssb-like
REPA_OB_2
OB_MEIOB_N
TriTu
POT1PC
RecG_wedge
SHLD2_OB1
Motif
Other DBs
NCBI-ProteinID:
XMB88768
LinkDB
All DBs
Position
3714162..3715616
Genome browser
AA seq
484 aa
AA seq
DB search
MTDIETIYKKLSHVISREDFLHRTQEKVENMGGLCDEAMAAMLVANELGFSDAGRDNIKI
ESITPESGPVNFIARIISVFDTKEFTRNDGTIGRVGNLIVGDETGKVKLTLWDNMADLIK
TGKVKAGQTVQVSGFAKQGYSGVEVNIGNNGVLTESEEEIDVVSSSHKIKDIKDGMGDLN
LTGKVLEVSEVRTFQRKDGNSGRVGNLTIGDETGTLRVTLWDEKTDFLNQIEYGDTVELV
NAYARQNAFTQKIELQIGNRSIIRKSEKKVEYEEEFTPVADIKAEMNNINVSGRVLDISE
VRTFEKKDGSAGRVGNILLGDSTGKIRLTVWDEKTDFLEEIDFDETVEVLNAYSRENAFN
QQVELSLGARGTIQRSEKKVDYREKFTDIVNIVPGESYSVQGKVSEIGELREFEKEDGTG
NLVANLQLKDETGSIRLTLWGEQAYVIEDLDIDSEIQIIDAYAKYGLNEEMELSVGNRSR
VIIL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgacagatattgaaactatttacaagaagctcagccacgtcataagtagagaggatttc
ctgcaccgcacgcaggaaaaagtcgaaaatatgggtgggctctgtgatgaagcaatggca
gctatgctggtcgccaatgagctgggattctcagatgcgggcagggataatataaaaata
gaaagtatcacccccgagagcggacctgttaattttattgcaagaattatttcagttttc
gatactaaagaattcacacggaatgacgggactatagggagagtgggaaaccttatagtc
ggagacgagacaggaaaagtgaaattaactttatgggacaacatggcagacctgataaaa
acgggaaaggtaaaagcaggacaaaccgttcaggtcagcggatttgccaagcaggggtac
tcgggagtggaagttaatatcggcaataatggggtgctgaccgaaagtgaagaagagatt
gatgtggtttcgagcagccataaaataaaggatataaaagatggcatgggagacctgaac
cttactggaaaggtactcgaagtctcggaagtcagaaccttccagcgtaaagatgggaac
agcggaagagttggtaacctgacaattggagatgaaacaggtacacttcgagtgactctc
tgggacgaaaaaaccgatttcctgaatcagattgagtatggggacactgttgagctcgtt
aatgcttacgccaggcaaaatgcctttacccagaaaattgaactgcaaataggaaacagg
agcataataaggaaaagtgaaaagaaagtcgaatacgaagaggaatttacccctgttgca
gatataaaagctgaaatgaataatattaatgtctccggaagggtgcttgatatctcagaa
gtcaggactttcgagaaaaaggacggatctgctggaagagttggaaatatcctgttaggg
gattccacaggcaaaataagattgacagtctgggatgagaaaactgattttcttgaagaa
atcgactttgatgaaaccgttgaagtccttaacgcttattcccgggaaaacgctttcaac
cagcaggttgaactcagcctgggagccagaggaacaattcaaagaagtgaaaaaaaggtt
gattacagagagaaatttactgacattgttaatatcgtccccggggaaagttactctgtg
cagggaaaagtttccgagataggagaacttagagaatttgaaaaagaagacggaaccgga
aatttggttgcaaaccttcagcttaaagatgagacaggcagcatccggctgactctctgg
ggagaacaggcgtatgtaatagaagacctggatattgattccgaaattcagattattgat
gcatatgccaagtatgggctgaacgaagaaatggaactgagtgttggaaacaggagtaga
gtgattattctttga
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