Methanosarcina hadiensis: RSJ42_17205
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Entry
RSJ42_17205 CDS
T10775
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mhab Methanosarcina hadiensis
Brite
KEGG Orthology (KO) [BR:
mhab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mhab03016
]
RSJ42_17205
Enzymes [BR:
mhab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RSJ42_17205
Transfer RNA biogenesis [BR:
mhab03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RSJ42_17205
Prokaryotic type
tRNA splicing ligases
RSJ42_17205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XMB89002
LinkDB
All DBs
Position
4014946..4016448
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AA seq
500 aa
AA seq
DB search
MVESEDKPIEESGIENDQRDIKSLVHKLSDNEWEIPKGHISNMRVPGRLFVSEKLLAGIE
PGTIDQIANVATLPGIQKYSMAMPDAHLGYGFAIGGVAAFDVEEGIISPGGVGFDINCGV
RLIRTSLQKEDVIPHIKELTDELFHNVPAGVGSKSRFKASDKELDSAFLEGAKWAVDAGY
GVEADVEHCEGNGFLEGADPSQVSTKARNRGKPQLGTLGSGNHFLEVQYIDEIYDREVAS
TFGLEEGQVTVMVHCGSRGAGHQICTDHLKELSQAVKKYAIEIPDKQLACAPAQSKEAQN
YFKAMLCAANYAWANRQMITHWTRESFEKIFGRDADDMGMSLLYDVAHNVAKLEEHSIDG
RKKEVYVHRKGATRAFPSGHPEVPLAYRDVGQPVLIPGSMGTPSFILCGAKDSMDVSFGS
ACHGAGRVMSRAHAKKEFHGQSVKENLEAHGITVRATHPSVIAEEAPGVYKSSSEVVNVV
HELGIARKIARVIPLGVAKG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggtagagagtgaagataaacctattgaggaatcaggtattgaaaacgatcagagagat
atcaaaagtctggtccataagctttccgataatgaatgggaaattccgaaagggcatatt
tccaatatgagagtcccagggcgcttatttgtgtctgagaagttgcttgcagggattgaa
ccaggtacgattgaccagattgcaaacgtagcaacgcttccgggcatccagaaatattcc
atggcaatgcccgatgcccatctcggttatggatttgctataggaggggttgcagctttt
gatgtcgaagaaggaattatcagccccggaggggtcgggtttgatatcaactgcggtgta
aggcttatccgcacaagccttcaaaaagaagatgttatcccgcacataaaggagctgact
gacgaactgttccacaacgtgcccgctggtgtcggttcaaaaagcaggttcaaggcttct
gacaaagagctggacagtgcgtttctcgaaggcgcaaaatgggcagtagatgccggatat
ggtgtagaagcagatgtggaacactgtgaaggaaatggctttctggaaggggcagatccg
tcccaggtaagtacaaaagcacggaacaggggaaaaccccagttagggaccctcggaagc
ggcaatcacttccttgaagtccagtatatagacgagatctatgacagggaagtggcttcg
accttcgggcttgaagaaggccaggttacagttatggtccactgcggatcaagaggagca
gggcatcagatatgtacggaccatctgaaagagctctctcaggctgtgaagaaatatgcg
attgaaattccggacaaacagcttgcctgcgctccggctcagtcaaaggaagcacagaac
tatttcaaagccatgctctgtgctgcaaattatgcatgggctaacaggcagatgattact
cactggacaagggaatcttttgaaaaaatctttggtagggatgccgatgacatggggatg
agcctcctttatgatgtcgcccacaatgtggcaaaactggaagaacacagtattgacggc
aggaaaaaagaggtttacgtccacaggaaaggggcaacaagggcatttccatcagggcat
ccggaagttcctctcgcgtacagggacgtagggcagcctgttttaattcccggaagcatg
ggaactccttcattcatactatgcggtgcaaaagactccatggatgtttctttcggtagc
gcctgtcacggggccggaagagttatgagcagggcgcacgcaaagaaggaattccatgga
cagagtgtaaaagagaaccttgaagctcatggaatcactgtaagggcaactcatccttcc
gtaattgccgaagaggctcccggagtgtataagtcaagcagtgaggtagtaaatgtcgtg
catgagctcggcatcgcccgtaaaattgcaagagtaattccgcttggagttgcaaaaggt
taa
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