Methanosarcina hadiensis: RSJ42_18325
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Entry
RSJ42_18325 CDS
T10775
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mhab Methanosarcina hadiensis
Pathway
mhab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSJ42_18325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhab03019
]
RSJ42_18325
Messenger RNA biogenesis [BR:
mhab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RSJ42_18325
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
XMB89206
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Position
4275327..4276670
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AA seq
447 aa
AA seq
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MTEIGIVAVGGYNEMGRNMTAVIIGEDIVILDMGLRLDRVQIHEDVEIDKMHSLELIEMG
AIPDDTIMKEINGTVRAIVCTHGHLDHVGAIPKLAHRYNAPILATPYTAAIIRQQIESER
KFEVCNRVIPLQAGGTYQVTEDISIEFIRVQHSIIDCVLAAVHTPAGAVLYACDFKLDRT
PTMGDAPDFDRFKSLGKEGVIAMITESTNAGRSGKTPSEQIAKDMVRDVLLGTEESDVGM
IITTFASHIARLKAIIEAAEEMGRIPVLMGRSMERYVGAARDLGYLELPSNVEIYGTRKD
VDRAFKRIMQDGKNKYLPIVTGHQGEPGSILVRVANGETPYTIEPGDRIIFSANVIPSPM
TQANRYALETKIKMKGGRIYDNVHVSGHAYREDHWELLRMINPEHVIPAHGDMEMHGHYI
EMAEDAGYVLGDTVHLLRNGEVLYIEE
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaataggtattgttgcagtcggcggctataatgaaatgggccgcaatatgact
gctgttattataggcgaagatattgtcattcttgatatgggactcagacttgacagggtt
caaattcacgaggatgtcgagattgacaaaatgcattctcttgaactgatcgagatgggt
gcaattcctgatgatacaatcatgaaagaaataaacgggactgtgagggcaatcgtctgt
acccacgggcaccttgaccacgtaggcgcgatcccgaaacttgcccacagatacaatgcc
cctatacttgccactccgtacacagcagctattatcaggcagcagatagagtctgagcgc
aaatttgaggtttgcaacagggttattcctctgcaggcaggcggaacctatcaggttacg
gaagatatttccatcgaattcatcagggtccagcacagcatcattgactgtgtgcttgca
gctgtacacactccggcaggagctgtcctttatgcatgcgacttcaagctggacaggact
ccaacaatgggtgatgctcctgactttgaccgcttcaaatccctcggaaaggaaggggtc
attgcgatgattacagagagcacaaatgcagggcgctcaggcaagactccttcggaacag
atcgcaaaagatatggtcagggatgttctgctcggaaccgaagaatctgatgtcggcatg
attattacgacctttgcttctcacattgcgaggcttaaagcaatcatcgaggctgccgag
gaaatgggcagaatccctgtgctcatgggccgctccatggaacgatatgtgggtgctgcc
agggatctcggttatcttgagctgccctcaaatgttgagatttacggcacgagaaaagat
gtcgacagggcattcaagcgcatcatgcaggatggtaaaaacaaatacctgcccattgtt
acaggtcaccagggagagccaggctctatccttgtgcgggttgcaaacggggagactccc
tatacaattgagcctggggacaggatcattttctctgcaaacgtgatcccgagccctatg
actcaggctaaccgctacgcccttgaaaccaaaatcaagatgaagggcggaaggatttat
gacaatgttcacgtgtccgggcacgcatacagggaagaccactgggaacttctgcgcatg
ataaatcccgaacatgtaattcctgcccatggagacatggaaatgcacggacattatatt
gaaatggcagaagatgcggggtatgtactcggggataccgtacaccttctcagaaacggc
gaagtgttatatatagaagaataa
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