Methanosarcina hadiensis: RSJ42_18350
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Entry
RSJ42_18350 CDS
T10775
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
mhab Methanosarcina hadiensis
Pathway
mhab03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mhab00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
RSJ42_18350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhab03021
]
RSJ42_18350
Transcription machinery [BR:
mhab03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
RSJ42_18350
Prokaryotic type
Archaeal type
TFB
RSJ42_18350
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cas12f1-like_TNB
Sigma70_r4
Zn_ribbon_SprT
Lar_restr_allev
Zn_ribbon_LysW
RPA_interact_C
Zn_ribbon_IS1595
Trm112p
DUF7577
HTH_AsnC-type
BRF2-like_C_cyclin_rpt
HTH_Tnp_ISL3
A2L_zn_ribbon
Zn_ribbon_PaaD
Ribosomal_S27e
Motif
Other DBs
NCBI-ProteinID:
XMB89210
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All DBs
Position
4282357..4283370
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AA seq
337 aa
AA seq
DB search
MVEVERVRYSDTLEREKIRAMIKARKEKQKEQTVENEKAVCPECGSRNLVHDYERAELVC
GDCGLVIDADFVDEGPEWRAFDHDQRMKRSRVGAPMTYTIHDKGLSTMIDWRNRDSYGKS
ISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLPRTVRETAAVVYRKA
VDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIEEVSRVSRKEIGRTYRFISRELALK
LMPTSPIDYVPRFCSGLNLKGEVQSKSVEILRQASEKELTSGRGPTGVAAAAIYIASILC
GERRTQREVADVAGVTEVTIRNRYKELAEELDIEIIL
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggtagaagtcgaaagagttcgctattcggacactcttgaaagggaaaaaatacgtgcc
atgattaaagctcgcaaagaaaaacaaaaggagcaaactgttgagaatgaaaaggccgtg
tgtccagaatgcggtagcagaaacctagtccacgattatgagagggctgagctcgtgtgt
ggtgactgcggacttgtcattgacgccgactttgtggatgaaggaccggaatggcgagct
ttcgatcacgatcagcgcatgaagcgttcccgtgtgggtgcgcccatgacatatacaata
cacgacaaagggctttccacgatgattgactggaggaaccgtgactcctatggaaagtct
atctcctccaaaaaccgtgcacagctctatcgtttaagaaaatggcagcgtagaatccgt
gtaagtaacgcaactgaaagaaacctggcttttgcgctttccgaactggaccgaatggct
tctgctctcggtcttccgagaactgtcagggaaaccgctgcagtggtctacagaaaagcc
gtggacaaaaaccttatccgcgggaggagcattgaaggcgtagcagccgcagctctttat
gcagcctgccgccagtgcagtgttccgagaactcttgatgagatcgaagaggtttccagg
gtaagcaggaaggaaatcggaaggacctaccgtttcatttccagagaacttgccttaaag
ctcatgcctacctctccaattgactacgtcccaaggttctgctcagggcttaacctgaaa
ggagaggtccagtcaaagagcgttgagatcctcaggcaggcttctgaaaaagaactcaca
agcggaagaggccctaccggagttgccgcagctgcaatttatattgcatcaattctttgc
ggagaacggagaactcagcgggaagttgcagatgttgccggtgtaactgaagttaccatc
aggaacagatataaagagcttgcagaagaactggatatagagattattctctaa
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