Moraxella haemolytica: LU276_04520
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Entry
LU276_04520 CDS
T09918
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mhac
Moraxella haemolytica
Pathway
mhac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mhac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LU276_04520 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhac03400
]
LU276_04520 (mfd)
Enzymes [BR:
mhac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LU276_04520 (mfd)
DNA repair and recombination proteins [BR:
mhac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LU276_04520 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WII96079
LinkDB
All DBs
Position
964498..968043
Genome browser
AA seq
1181 aa
AA seq
DB search
MTNITIHTPKLQPNFLTHYQQGNDASLAFWLSDHTKIQNRLHLVICKNQEELQTLASELA
FFGVKVHVFADYETLVYDNLSVHQDIISERIELLTHMPTAGVLLVAIQTLMQKITPPSHL
LGRFFDLKVGDVFDLAHERIRLDKAGYEAVDNVYVAGEFAVRGSIVDIFVVGQPLPFRLE
LFDNEIESIKLFNPDTQRTVSQDDLAKLKQDGIFDDAMLPNTAKVEHFRLLPAREFDLDD
KETFRQNFASLFPNASARKFELYNDVMSGISPAGIEYYMPLFFELSQWQTQGALFSYLPD
DAIVICDDRLSAYHHEFWTQVNERHHSRAFDKDRPILPPDFLYLPSNEFFQSLKNYPRVV
FGNQENASAPFKDVITKAVPNLPINHQQDEPLDEFLRFVRGCDEPVLLACESAGRREIVL
ELLKGKLNTTVVGSFGEFIDKLPTFTDTLAIVVASIERVLWLMGEHGFCVITEAQIFGRQ
VNHARQRRQNALSQAFLIKSVSEMTEGSLVVHLSYGIGRYVGLVVLDVGEGEQEFIHIKY
ADDANVYVPITNLALIGRYSGTDSEAVQLSKIGSGKWDKARQKTLTDIYDVAAELLNTQA
RRNARQGISFDIDMVQYELFASGFDYEETLDQKLAIDAVMSDMKQAKPMDRLICGDVGFG
KTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFKNRFADWAIKIESLSRFVGKKTQD
KALTDLAEGKVDIIIGTHRLLQNDVKFKNLGLMIIDEEHRFGVRHKERIKAIQSDVDTLM
MTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFVAEKNEQTIKDAILREILRGGQVY
YLHNDVASINSVAENLSKLIPEVRVGVAHGQMAEKELYSVMSEFYHKKTNVLVATTIIET
GIDVPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYCYLFVPSIKGLASDAKKRLDAI
SRANTLGAGFMLASEDLEIRGAGEILGKEQSGNMQTIGFGLYMDMLDRAAKAIKSGKTPS
LETPLDLVSDINIHASALIPSDYLADVHERLLFYKRIANAQETDELNDLKSEMIDRFGGM
PTALANLFLVHKMRVQSMPLGITKIDVTGKLLTLEFKADTPIDGLAIIRLIQSNNGYRMM
GATTLKHTFKDEKDVATRVNAVFELLKYFENNLVEMKLASP
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacatcaccattcacaccccaaaacttcagcctaattttctaactcattatcag
cagggcaatgatgccagtttggcattttggctttcagaccatactaagatacaaaatcgg
ctacatttagtcatttgcaaaaaccaagaagaattacaaactctggctagtgagcttgca
ttttttggggttaaggttcatgtttttgctgattatgaaacgctggtttatgacaatctg
tctgttcatcaagacatcatctcggagcgtattgagcttttgacacacatgccaacagct
ggggtattgttggtggcaattcagacactcatgcaaaaaatcaccccaccaagtcatctt
ttgggaagattttttgatttaaaagttggcgatgtctttgatttggcacatgaaagaatc
agattggataaagcaggctatgaagcggtggataatgtctatgtggcaggcgagttcgct
gtgcgtggtagtattgtagatatttttgttgtcggtcagcctttgccatttcgcttagag
ctatttgataatgagatagagtccatcaaattatttaatccagacactcagcgtaccgtc
agtcaagatgatttagccaagctaaaacaagatggtatttttgatgatgccatgttgccc
aatacagctaaggttgaacattttcgtctgttgccggcacgagaatttgatttagacgac
aaagagacctttcgtcagaattttgccagtctattccccaatgcctccgccagaaagttt
gagctgtataatgatgtcatgagcggtatttcgccggcaggaattgagtattatatgcca
ctattttttgagttatcgcagtggcaaactcaaggagctttatttagctatctgcccgat
gatgcgattgtcatttgtgatgatagattgtctgcttatcatcacgagttttggacacag
gtcaatgaacgccatcattctcgtgcttttgataaagatagacctattttgccgccagat
tttttgtatctgccaagcaatgagttcttccaatctctaaaaaactatcctagagtggta
tttggtaatcaagaaaatgcatcagccccatttaaagatgttattaccaaagctgttcca
aacctgcccatcaatcatcagcaggacgaaccgcttgatgaatttcttcggtttgttcgt
gggtgtgatgagcctgtactgcttgcttgtgaaagtgcagggcggcgtgagattgttttg
gagttattaaaaggtaagttaaacacgactgtggtgggtagctttggtgagtttattgat
aagttaccaacttttacggatacattagcaatcgttgttgcctccattgagcgtgttttg
tggttgatgggtgagcatggtttttgtgtcattactgaagcacagatttttggcaggcag
gtaaatcatgccagacagcgacgccaaaacgccttatcgcaggcttttttgattaaatca
gtcagcgaaatgaccgaagggtcgcttgtcgtgcatttatcctatggtattggtcgctat
gtgggactggttgtgctagatgtgggagaaggtgagcaagaatttattcatattaaatat
gctgacgatgccaatgtttatgtaccgattaccaatcttgcgttaatcggtcggtatagt
ggtacagacagtgaggcggtgcagttgtcaaaaatcggttctggcaagtgggataaggca
cgccaaaaaactctaaccgatatttatgatgtggcagcagagctacttaatactcaggct
cgcagaaatgcacgccaaggcattagctttgatatagatatggtgcagtatgagctgttt
gccagtggatttgactatgaagagacgcttgaccaaaagctcgccattgacgccgtaatg
tcggatatgaaacaagcaaagccaatggataggctaatttgtggtgatgttggttttggc
aagacagaggtcgccatgcgagcagcattcattgctgtgcaagcgggctatcaggtggcg
gtgttggtaccaaccacactactggcaggacaacatgaggacagttttaaaaatcgcttt
gctgattgggcaattaaaattgaaagtttatcaagattcgttggtaaaaaaacacaagat
aaggcactgactgatttagcagaaggcaaggtggacattattattggtacgcataggcta
ctacaaaatgatgtgaaatttaagaacttgggtctaatgattattgatgaagagcatcgc
tttggtgtgcgtcataaagaaagaattaaagccattcagtctgatgttgataccttaatg
atgaccgcaacacccattcctcgcacgctgaatatggcactatcaggaatgcaagacatc
tctatcattgcaacaccaccagctagacgactggctatcaaaacctttgtcgctgaaaaa
aatgaacagacaatcaaagatgccatcttgcgtgagattctgcgtggcggacaggtatat
tatttacataatgatgttgcaagcatcaattcagttgctgaaaatctatccaaacttatc
cctgaagtgcgtgtgggggtggcacatggacagatggcagaaaaagaactatacagcgtg
atgagtgagttttatcacaaaaaaaccaatgtgctggtagcaaccacgattattgagaca
ggcattgatgtacccaatgccaacaccatcatcatcaaccgagctgataaatttggactg
gctcagctacaccagttgcgtgggcgagtgggtcgttcgcaccatcaggcgtattgttat
ttgtttgtaccatcaatcaaaggcttggcaagcgatgccaaaaaacgccttgatgccatc
agtcgtgccaacacgcttggggccggattcatgctggccagtgaagatttggagattcgt
ggggcgggggagattttaggcaaagagcaatcgggtaatatgcagaccattggttttggg
ctgtatatggatatgctagaccgtgccgccaaagcgattaaatcgggcaagaccccaagc
ctagaaacaccacttgatttggtcagtgatatcaatatccacgcatctgccttgatacct
agcgattatctagctgatgttcatgaaagactgttgttctataaacgcattgccaacgcc
caagaaaccgatgagcttaatgacttaaaaagtgagatgattgaccgctttggtggtatg
cccaccgctcttgccaatctgtttttggtacataaaatgcgagtacaaagtatgccgctt
ggcatcacaaagattgatgtaacaggaaaattactaaccttagagtttaaggcagatacg
ccgattgatggacttgccatcattaggttgattcagtctaataatggttatcgcatgatg
ggagcgacaacgctcaaacacacctttaaagatgaaaaagatgtggctacaagggtaaat
gccgtctttgaattgcttaaatattttgaaaataatttggttgagatgaagttagcatcg
ccttaa
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