Mycobacterium haemophilum: B586_08905
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Entry
B586_08905 CDS
T04111
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mhad
Mycobacterium haemophilum
Pathway
mhad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B586_08905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhad03019
]
B586_08905
03009 Ribosome biogenesis [BR:
mhad03009
]
B586_08905
Enzymes [BR:
mhad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B586_08905
Messenger RNA biogenesis [BR:
mhad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B586_08905
Ribosome biogenesis [BR:
mhad03009
]
Prokaryotic type
rRNA processing factors
B586_08905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
IF2_N
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AKN16640
LinkDB
All DBs
Position
complement(2852017..2854794)
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AA seq
925 aa
AA seq
DB search
MIDGAPPSDPSQEPTQHEELPDRLRVHSLARTLGTTSRRVLDALSALDGRIRSAHSSVDR
VDAVRVRDLLASQPDLPLDLTAVPDNPAAPEEPESRLLLETAIERPHYMPLFVAPQPIEV
DDDARADDGVESGDDSDVDDDEDQADRPANRRRRRGRRGRGRGRGEQGGSDIQSDSDDEA
DAEDLDGQDSDDSEDTEAGDDENGSSEAGNRRRRRRRRRKSGSGDDDEGPAPDDPPNTVV
HERAPRAAGRSASSDDGYNGAGSAEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAE
FLARREAVERVMVVRDRVRAEPPHPGARYTQIAVLEDGIVVEHFVTSAASASLVGNIYLG
IVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGADRKIEQALKPGDYIVVQVSKD
PVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEILREVVPPDAGVIIR
TASEGVKEDDIRKDVTRLQEHWELIEAKATQTKEKAAGAAVALYEEPDVLVKVIRDLFNE
DFAGLVVSGDEAWNTINEYVNSVAPELVSKLTKYEPPIGPDGQHGPDVFAVHRIDEQLAK
AMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRL
RDIGGIVVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGL
VEAFSTSCPNCTGRGILLHADPVDSAPAAGRKSESGGRRSKRSKKNRSDEPEVAPVMARV
PVHAPGEHPMFKAMAAGSSSVVVGGDAESDESAAELTGEIDEQAAAGLEDVDQDDFDADE
EDTDEEDELDDDEELDDDEDLGEEDLSDEELDLDDDLDVDESDSDIDNAELPDSPTIPIS
AGSGFARPRRRRAAGRPAGPPVHLD
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
gtgatagacggtgcacccccttcagacccatcacaagagccgacgcagcatgaggaactg
cccgaccgcttgagagtccattcgctagcccgaacgttgggaaccactagcaggcgagtg
ttggatgcgctgagcgctctggacggacggatccgtagcgcacattccagcgtcgaccgc
gtcgacgcggtccgggtccgtgatctgctggccagccaacccgacttgcctctcgacctg
actgccgtacctgataacccggccgcgcccgaagagcccgaatcccggctgctgctcgag
actgcaatagagcggccgcactacatgccgttgttcgtggcgccgcaaccgatagaagtc
gatgacgacgcccgcgctgatgatggtgtggaatccggtgacgactccgacgtggacgac
gacgaagaccaagccgatcgaccggcgaaccgtcgtcggcgtcgtggccgtcggggtcgt
ggccggggtcgcggtgaacagggtggatccgacatccagagcgactcggatgacgaggcc
gacgctgaggacctcgatgggcaagattccgacgactccgaagacaccgaagccggtgac
gacgagaacgggtcgtcggaagccggcaaccgccgccgccgtcggcgccgacgccgcaag
tcggggtccggtgacgacgacgaggggcccgcgcccgacgatccgccgaacaccgtcgtg
cacgaacgggcaccccgcgcggctggcaggtctgctagctctgacgatggttacaacggc
gcgggcagcgccgagatcaagggtatcgacggttcgactcgactggaggccaagcggcaa
cgccgccgagacgggcgcgacgccggacggcgtcgtccaccagtgttgagtgaggccgaa
ttcctggctcgccgcgaggccgtcgagcgggtcatggtggtgcgcgatcgggtccgcgct
gagccgccgcacccgggcgcccgatacacccagatcgcggtgctcgaagacggcatcgtg
gtcgagcatttcgtcacctcagccgcttctgcttccctcgtggggaacatctacctgggt
atcgtgcagaacgtgctgccgtcgatggaggcggccttcgtcgacatcggtcgcggtcgc
aacggcgtgctctatgccggagaagtgaactgggaagccgccggattaggcggggccgac
cgcaagatcgaacaggccctcaaacccggcgactacatcgtcgtccaggtcagcaaggac
ccggtcgggcacaaaggcgcgcggctcaccacgcaggtgtcgttggccggtcgctacctg
gtttacgttccgggggcgtcgtcgaccgggatcagccgtaagctgcccgacaccgaacgc
cagcgcctcaaggagatcctgcgcgaggtggtgccgcccgacgcgggcgtgatcatccgc
accgcctcagagggtgtcaaagaggacgacatccgcaaagacgtcacccgcctgcaggag
cactgggaactaatcgaggccaaggcaacccagaccaaggagaaggccgctggcgccgca
gtggccctctacgaagaaccggacgtgttggtcaaggtcatccgcgacctgttcaacgag
gatttcgccggcctcgtcgtctccggcgacgaggcgtggaacaccatcaatgagtatgtg
aattctgttgctcccgaacttgtttcgaagctgacaaaatacgagccgccgatcgggccg
gacgggcagcacgggcccgacgtgttcgcggtgcatcgcatcgacgagcaactggccaag
gcgatggaccggaaggtgtggctgccctcgggcggcacactggtgatcgaccggaccgag
gcgatgacggtgatcgacgtcaataccggcaagttcaccgggtccgggggcaacctcgaa
cagaccgtcaccaagaacaacctggaggcagctgaggagatcgtgcgccagctgcggctg
cgtgacatcggcggcatcgtggtgatcgacttcatcgacatggtgctcgagtccaaccgc
gacttggtgttgcgccgactgaccgaggcgctggctcgcgaccgcacgcgtcaccaggtg
tccgaggtgacgtcgctgggtctggtgcaattgacccgcaagcggttgggcaccgggctg
gtcgaagcgttctcgacctcgtgcccgaactgcacgggtcgggggatcctgctgcatgcc
gacccggtcgattcggccccggcggcggggcgcaagtctgagtcaggtggtcggcgaagc
aagcgatcgaagaagaaccggtcggacgagccggaagtggccccggtgatggcaagggtg
ccggttcatgctccgggcgagcatccgatgttcaaggcgatggccgcgggctcgtcctcg
gtggttgttggcggcgacgccgaatccgacgagtccgctgcggaactcaccggggagatc
gacgagcaggctgccgctggtctagaggatgttgaccaggacgacttcgacgccgacgaa
gaagacaccgacgaggaagacgaactcgacgatgacgaggaactcgacgacgacgaagat
cttggcgaggaggaccttagcgacgaggaactcgatctcgacgacgacctcgacgttgac
gagtcagactccgacatcgacaacgccgaactgcctgacagccccactatcccgatcagc
gccggatcaggttttgcccgtccgcgccggcggcgcgcggcgggccgtccggccgggcca
ccggttcacctggactga
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