Mannheimia haemolytica D153: F382_06270
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Entry
F382_06270 CDS
T02746
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mhae
Mannheimia haemolytica D153
Pathway
mhae03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mhae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
F382_06270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhae03400
]
F382_06270
Enzymes [BR:
mhae01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
F382_06270
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
F382_06270
DNA repair and recombination proteins [BR:
mhae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
F382_06270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
zf_C2H2_13
NFACT_N
DZR
HscB_4_cys
Zn_ribbon_8
RNHCP
Auto_anti-p27
C1_2
Motif
Other DBs
NCBI-ProteinID:
AGQ25588
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All DBs
Position
1217422..1218246
Genome browser
AA seq
274 aa
AA seq
DB search
MPELPEVETSVRGVSPYLVGQTIEQIIVRQPKLRWTVSPELSQMAGAKITAVERRAKYLI
IRTDKGDILVHLGMSGSLGILQERQQKEIGKHDHVDLITQNGTILRYNDPRKFGCWLWAE
KAEDHELLRKLGPEPLSNDFTADYLFAKSRKKTTACKTFIMTNEVVVGVGNIYACESLFM
AGIHPELAAQNLTKKQCERLVKTIKEVLTKAIIQGGTTLKDFIQPDGKPGYFAQVLQVYG
RKGETCNDCGKPIETKVIGQRNTYFCPKCQRLPK
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacccgaagttgaaaccagcgttcgtggtgtatcgccctatttggttggg
caaactattgaacaaatcatcgttcgtcagccaaagttacgttggacggtgagtcctgaa
ttaagccaaatggcaggggcaaaaattaccgcagtagaaagacgtgccaaatatctgatt
atccgcaccgacaaaggcgatattttggtgcatctgggaatgtccggctcgctcgggatt
ttgcaagaacgtcaacaaaaagaaattggcaaacacgaccacgtcgatcttattacccaa
aacggcacaattttacgctataacgaccctcgcaaattcggctgttggctatgggcagaa
aaagcagaagatcacgaactgttgcgtaaactcgggcctgaaccgctttcaaacgatttc
acagcagattacttatttgcaaaaagccgcaaaaaaacgaccgcttgtaaaacctttatt
atgaccaatgaagtggttgttggggtggggaatatctatgcgtgcgaaagtttatttatg
gcaggcattcaccctgagcttgcagcacaaaacctgactaaaaaacagtgcgaacgttta
gtaaaaaccatcaaagaagtgctgactaaagcgattattcaaggcggcacaacactgaaa
gattttatccaacctgacggcaaaccaggctattttgctcaagtgttgcaagtgtatgga
agaaaaggggaaacctgtaatgactgcggaaagccgattgaaactaaagtaatcgggcaa
cgtaatacctatttttgcccgaagtgtcagagattgccgaagtaa
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