Microbispora hainanensis: OHB01_21480
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Entry
OHB01_21480 CDS
T09710
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mhai
Microbispora hainanensis
Pathway
mhai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OHB01_21480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhai03019
]
OHB01_21480
Messenger RNA biogenesis [BR:
mhai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OHB01_21480
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
NADase_NGA
Motif
Other DBs
NCBI-ProteinID:
WUP79559
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Position
4575027..4576712
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AA seq
561 aa
AA seq
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MSHPHPELGPPPALPENGLRIVALGGLGEIGRNMAVFEYDGRLLVVDCGVLFPEPDQPGV
DLILPDFDYIRGRLDDIEALVLTHAHEDHIGAVPYLLRERRDIPIVGSRLTLGLIESKLT
EHRMQPVKVEVVEGERRTFGPFECEFVSVNHSIPDALAVAIRTPAGLVLHTGDFKMDQLP
LDGRLTDLGAFARLGAEGVDLLMSDSTNSEVPGFVTSEREIAPVIDDVFRSATKRIIVAS
FASHIHRVQQIMDAAEKHGRKVALIGRSMVRNMGVARELGYLKVPGGLLVDSREIEEWPP
EDVVLICTGSQGEPMAALSRMANRDHPIRIAEGDTVLLASSLVPGNETAVSKVINGLNRW
GARVVHKGNARVHVSGHAAAGELLYVLNLTKPSNFMPVHGEWRHLRAHARLAELTGVPRE
NIVIAEDGVVVDLVDGQARITGAVPCGYVFVDGTSVGDITDVALKDRRILGDEGFISIVV
VVDSTTGKLTGGPEITARGSGIDPDAFDAVIPQIEVALQEVAASGVADELQIRRTIRRTV
GRWVSDTYRRRPMIIPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatccgcatcccgaactcggtccgcctccggcgctgccggaaaacggcctgcgc
atcgtggcgctgggcggcctcggtgagatcggccgcaacatggcggtgttcgagtatgac
ggccgcctgctcgtggtggactgcggtgtgctgttccccgagcccgaccagccgggcgtc
gatctcatcctgcccgacttcgactacatacgggggcggctcgacgacatcgaggcgctc
gtgctcacgcacgcccacgaggaccacatcggcgcggtgccctacctgctgcgcgagcgg
cgcgacatcccgatcgtcggttcgcggctgacgctcgggctcatcgagagcaagctgacc
gagcaccggatgcagccggtcaaggtcgaggtggtcgagggcgagcggcgcacgttcggg
ccgttcgagtgcgagttcgtctcggtcaaccactcgatccccgacgcgctggccgtggcg
atccgcacccctgcgggcctcgtcctccacaccggcgacttcaagatggaccagcttccg
ctggacgggcggctgaccgacctcggggcgttcgcccggctcggggccgagggcgtcgac
ctgctgatgtccgactccaccaactccgaggtgccgggcttcgtcaccagcgagcgggag
atcgcgccggtcatcgacgacgtcttccgcagcgcgaccaagcggatcatcgttgcgagc
ttcgcctcgcacatccaccgcgtgcagcagatcatggacgcggccgagaagcacggccgc
aaggtcgcgctcatcggcaggtcgatggtgcgcaacatgggcgtggcgcgcgagctgggc
tacctgaaggtgcccggtggcctgctcgtggactcccgggagatcgaggagtggccgccg
gaggacgtggtgctgatctgcaccggctcccagggcgagccgatggccgcgctgtcgcgc
atggccaaccgcgaccacccgatcaggatcgccgagggcgacaccgtcctgctcgcctcg
tcgctcgtgccgggcaacgagacggcggtcagcaaggtcatcaacggcctcaaccggtgg
ggcgcgcgggtggtccacaagggcaacgcgcgggtgcacgtctccgggcacgccgccgcg
ggcgagctgctgtacgtgctcaacctcaccaagccgtccaacttcatgcccgtacacggg
gagtggcggcacctgcgggcgcacgccaggctcgccgagctgaccggcgtcccccgggag
aacatcgtgatcgccgaggacggcgtggtcgtcgacctcgtcgacggccaggcgaggatc
accggcgcggttccgtgcgggtacgtcttcgtagacggcacctcggtgggcgacatcacg
gacgtggcgctcaaggaccggcggatcctgggcgacgaggggttcatctccatcgtcgtc
gtggtcgactccaccacggggaagctcaccgggggcccggagatcaccgcgcgcggctcg
ggcatcgaccccgacgcgttcgacgcggtcatcccgcagatcgaggtcgcgctgcaggag
gtcgccgcgtccggagtggccgacgagctgcagatccgccggaccatcaggcgtacggtg
gggcgctgggtgagcgacacctaccgccgccgcccgatgatcatcccggtggtcgtcgag
gtctga
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