Mannheimia haemolytica USMARC_2286: N220_02625
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Entry
N220_02625 CDS
T02758
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mhal
Mannheimia haemolytica USMARC_2286
Pathway
mhal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mhal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N220_02625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhal03400
]
N220_02625
Enzymes [BR:
mhal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N220_02625
DNA repair and recombination proteins [BR:
mhal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N220_02625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AGR74297
LinkDB
All DBs
Position
524721..528254
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLISLNLPKSDGNFQDHQTLGNLVGHSDTLAISQAARAFYGLTVVVTPDTRTALRLEKA
LPQFAGLPVQLFPDWETLPYDNFSPHQDIISARLSALFELQQGRQQILLLPINTLMQKVC
PPNYLANNVLLIKKGDRFSIQKLRLQLENAGYRAVEQVLEYGEYAVRGSILDLFPMGAEE
PFRLDFFDDEIDSIRTFDVDNQRTKTEIAEINLLPAHEFPTDSNGIEHFRAKFREKFGEI
RREPEHIYQQVSKGILNAGIEYWQPLFFEEMASLFDYFPAQTLFITFADIQQKAEQFHQD
TQNRYESHRVDPMRPLLPPSDLWFAIDEVNRWLKGYPRLTITSEKIRKSAAKMNANVANL
PDIAIQSSAKEPFSAFQQFRQKFDGNILFSVESEGRRETLLDLLAPLGVKPKQVNSLDEA
QGLPFSLIISPLDQGFVVETGGHGTRPYDDELNTNGENDNNYVGAGPVPARNLAIICETD
LLGERVQTRREKNRKAVNPDTLIRNLAELKIGQAVVHLENGVGRYGGLTVLDAGGIKAEY
LVLHYANDAKLYVPVASLHLISRYIGGADETAPLHKLGSEAWAKTRQKAAEKIRDVAAEL
LDVYAKRESQTGFAFAYDKAEFDQFSATFPYEETDDQKIAINAVISDMCQAKAMDRLVCG
DVGFGKTEVAIRATFLAVMNHKQVVILAPTTLLAQQHYENFKDRFANYPVNVEVLSRFKT
AKEQKTILQNVAEGKVDILVGTHKLLQDDVAFRDLGLLVIDEEHRFGVRQKEKIKQLRAN
VDILTLTATPIPRTLNMALNGMRDLSIIASPPARRLLIKTFVRQSDEMVIREAILREILR
GGQVYYLHNDVATIENCAEKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCS
TIIETGIDVPTANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPHPKTLTKDAEQ
RLEAMSTIDNLGAGFALATHDLEIRGAGELLGSEQSGQIESIGFSLYMDLLENAVKALQE
GREPSLDEITQHQAEIELRVPALLPDDYLPDVNMRLSFYKRIASSENLQSLNDLKVELID
RFGLLPEATKNLFAITQLRLSAQTLGIKKIDAGIHGGYLEFKPTAQPDPMKFIALIQKQP
AVYSFEGAVKFKFRLALEDNRKRLEFVENLLREVVGG
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtctttaatttcacttaatctgccgaaatctgacggcaattttcaagatcatcaaacc
ctcggtaaccttgtcgggcattccgatacccttgcgatcagccaagctgcccgagccttt
tacggcttgacggtggttgtcacacccgacacccgcacggcgttacgcttggaaaaagcc
ttgcctcagtttgcagggctgccagtgcaactgttccccgattgggaaaccttgccttat
gacaatttttcgccgcaccaagacattatctccgcccgactttctgccctgtttgaactg
caacaagggcgacagcagattttgctgttgccgatcaacaccttaatgcagaaggtctgc
ccgccgaattatctcgctaacaatgtgctgttgattaaaaaaggcgaccgtttttcgatt
caaaaactgcggttacaactggaaaatgccggctatcgggcggtggaacaggtgttggaa
tatggtgaatacgccgtgcgtggctcgattttagacctattcccgatgggagcagaagag
ccgtttcgcctcgattttttcgatgatgagatcgacagtatccgcacttttgatgtggat
aaccaacgcaccaaaacggaaattgccgaaattaatttactgccggcacacgagttcccg
actgatagcaacgggatcgagcattttagagccaaattccgtgaaaaattcggtgaaatc
cgccgtgagccggagcatatttatcagcaagtcagcaaaggcattttaaatgcagggatt
gagtattggcagccgttgttttttgaggaaatggcaagtctgtttgactatttccctgcc
caaacgctgtttatcactttcgccgatattcagcaaaaagctgaacaatttcaccaagat
acccaaaaccgctatgaaagccaccgagtggatccgatgcgaccgctactgccgccgagt
gatctctggtttgcgattgatgaggtaaatcgctggctgaaaggctatccccgtttaacg
ataacttcggagaaaatccgtaaatcagcagcgaaaatgaatgcaaatgtggctaacttg
ccggatattgctattcaatcctctgccaaagagccgttttctgctttccagcaattccgc
caaaaatttgacggcaacattctgttttcggtggagagcgaagggcgaagagaaaccttg
ctggatttgcttgctccgcttggggtgaagccgaagcaggtcaattcattagatgaagca
caaggtttgccattttccctgattatttcaccgcttgatcaagggtttgtggtggaaacg
ggcgggcacgggacccgtccctacgatgatgaattaaatacaaatggcgaaaatgataat
aactacgtaggggcgggtcctgtgcccgcccgcaaccttgccatcatctgcgaaaccgac
ctgctgggcgaacgtgtgcaaacacggcgtgagaaaaaccgcaaagccgtcaatcctgat
accttaatccgtaatttagcagaactcaaaatcggacaggcggtggtgcatttggaaaac
ggcgtggggcgttacggtggcttaaccgtgctggacgctggtgggatcaaagccgaatat
ctcgtgctacattatgctaacgatgccaaactctatgtgccggttgcctcgctccattta
atcagccgttatatcggtggggcggatgaaactgcgccgctacataaattaggcagtgaa
gcgtgggcgaaaacccgccaaaaagcagcggaaaaaatccgtgatgtggcggcagaattg
cttgatgtttatgccaaacgagaaagccaaaccggttttgcgtttgcctacgataaagcg
gaatttgatcagtttagtgccactttcccttatgaggaaacggacgatcagaaaattgcc
atcaatgccgtaattagcgatatgtgccaagccaaagcgatggatagattggtgtgtggc
gatgtcggcttcggcaaaaccgaagtggccattcgagcgactttcttggcagtgatgaac
cataaacaggtggttattcttgccccaactaccttgctcgcccaacagcattatgagaat
ttcaaagaccgtttcgccaattaccctgtgaatgtggaagtgctgtctcgctttaaaacc
gccaaagagcagaaaacgattttgcaaaatgtggcggagggcaaagtggatattttggtc
ggcacgcacaaactgttgcaagacgatgtagcgttccgtgatcttgggcttttagtgatt
gatgaagaacaccgtttcggcgtacgccaaaaagagaaaatcaaacaactgcgtgccaat
gtggatattctgaccctcaccgccacgccaattccaagaacgctgaatatggcactcaac
ggaatgcgtgatctctcgattatcgccagcccgccggctcgccgacttttaatcaaaacc
tttgtgcgacaaagtgatgaaatggtaatccgtgaggcaattttgcgtgaaattctgcgt
ggtgggcaggtttactacctccataacgatgtggcaaccattgaaaattgtgccgagaaa
ttggctgaactcgtgccagaggcaagaattgtgatcggacacgggcagatgcgtgagcgt
gaattggagcgggtgatgagcgatttctatcatcaacgctttaacctgctggtttgctcc
accattattgaaacggggattgacgtgccgactgccaataccattattatcgaacgggcg
gacaaattcgggctggcacaactgcaccaactgcgtggacgggtcggacgctcgcaccac
caagcctacgcctatatgctcacaccgcacccgaaaacgctcaccaaagatgccgagcaa
cgcttggaggcgatgagtaccattgataatctcggggccggttttgcgttggcgacccac
gatttagaaattcgtggtgcaggcgaattgctcggttcggagcagagcggacagattgaa
agcatcggtttttcgctctatatggacttgctcgaaaatgcggtcaaagctttgcaagaa
gggcgagaaccgagcctcgatgaaatcacccaacaccaagcggagattgaattgcgtgta
ccggccttattgccggacgattatctgcctgacgtgaatatgcgtctgtcgttctacaag
cggatcgcaagctcggaaaatctgcaaagcctgaacgacttgaaagtggagctgatcgat
cgcttcggcttgctcccagaggcaaccaaaaacctgtttgcgataacccaacttcgcttg
tcggcacaaacgctcgggattaagaaaatcgatgccggcattcacggcggttatcttgaa
tttaaaccgacagcccagcccgacccaatgaagtttatcgccttaatccaaaaacaacca
gcggtgtacagttttgaaggggcggtgaagttcaaattccgcttagcactcgaagacaac
cgcaagcggttagaatttgtggaaaatttgctaagggaggttgtgggcggataa
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