Mannheimia haemolytica D171: J450_01135
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Entry
J450_01135 CDS
T02747
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mham
Mannheimia haemolytica D171
Pathway
mham03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mham00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J450_01135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mham03019
]
J450_01135
03016 Transfer RNA biogenesis [BR:
mham03016
]
J450_01135
Enzymes [BR:
mham01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
J450_01135
Messenger RNA biogenesis [BR:
mham03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
J450_01135
Transfer RNA biogenesis [BR:
mham03016
]
Prokaryotic type
tRNA degradation factors
J450_01135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
aRib
S1_RRP5
S1_2
KH_SLS1_2
KH-I_KHDC4-BBP
OB_RRP5_4th
HPS3_N
Motif
Other DBs
NCBI-ProteinID:
AGQ37813
LinkDB
All DBs
Position
262681..264831
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AA seq
716 aa
AA seq
DB search
MTPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV
DYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVN
PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAG
TDKAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENLKEFVKEAGKPRWDWVAPEPNTD
LINKVKALAETRLGDAYRIVEKQVRYEQIDAIKAEVIAQLTAEDETVSEGTIIDIITALE
SQIVRSRIIAGEPRIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERD
AQIIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEF
PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDI
LGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAI
PAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETNTSIDIDDDGTVKIAATD
GNAAKAVMARIEEIVAEVEVNQIYNGKVTRVVDFGAFVSILGGKEGLVHISQITNERVER
VADYLTVGQEVQVKVVEIDRQGRIRLTMKDINNTNEANAEETVAENVVETEQENNF
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgactccaattgtaaaacagtttaaatacggtcagcacaccgtgaccttagaaaccggt
gctatcgcacgccaagcaacggcagcagtaatggcaagtatggacgacacaaccgtattt
gttaccgtagtagcgaaaaaagacgtaaaagaagggcaagatttcttcccattaaccgta
gattatcaagagcgtacttacgcagccggtcgtattccgggcggtttcttcaaacgtgaa
ggacgtcctagcgaaggtgaaaccttaatcgctcgcttgatcgaccgtcctgtgcgtcca
cttttcccagaaggtttctttaacgaaattcaagtgattgcgaccgtagtatcggtaaac
ccacaaatcagtcctgatctggttgcgatgatcggtgcatcggctgccctttcattatcc
ggcgtgccgtttaacggtccaatcggtgcggctcgtgtcggttttatcaacgatcaattc
gtattaaacccaaccaccagcgagcaaaaaatcagccgcttagatttagtggttgcaggt
acagacaaagccgtgttgatggtggaatctgaagcggatatcttaaccgaagagcaaatg
ttagcggcggtggtgttcggccacgagcaacaacaggttgtaatcgaaaacctcaaagaa
tttgttaaagaagcgggcaaaccacgttgggattgggttgcaccagagccaaatacagat
ttaatcaacaaagtaaaagcattagcagaaacacgccttggcgatgcttatcgtatcgta
gaaaaacaagttcgttacgagcaaatcgatgcgattaaagcagaggtgattgcacaactt
accgcagaagatgaaactgtttctgaagggactatcatcgacatcatcaccgcattagag
agccaaatcgtgcgtagccgtattattgcaggcgaaccacgcattgacggccgtacggtg
gataccgtgcgtgcattggatatttgcaccagtgtgttaccacgcacccacggttctgct
cttttcacccgtggcgaaacccaagcattagcagtagcaacattgggcacagagcgtgat
gcccaaatcattgacgaattgaccggcgaaaaatctgaccgtttcttattccactacaat
ttccctccatactctgtgggcgaaaccggtcgtatcggctcgccaaaacgccgtgaaatc
ggtcacggtcgtttagcaaaacgtggcgtattagccgtgatgccaaccgctgaagagttc
ccgtatgtagtgcgtgtggtgtctgaaatcactgaatctaacggttcttcttcaatggca
tctgtgtgtggtgcgtctcttgcgttgatggacgcaggtgtgccaatcaaagcagcggtt
gccggtatcgcaatggggctcgtgaaagaagacgagaaattcgtggtactttctgacatc
ttaggtgatgaagaccacttaggcgatatggactttaaagtagcgggaacccgtaccggt
gtgactgcgctgcaaatggacatcaaaatcgaagggatcacccctgaaattatgcgtatt
gccttaaaccaagctaaaggtgcaagaatgcacattttaggtgtaatggaacaagccatt
ccggcacctcgtgcagatatttctgactatgccccacgcattcacacaatgaagatcgat
ccgaagaaaatcaaagatgtgattggtaaaggcggtgcaacaattcgtgctttaaccgaa
gagaccaatacttctatcgacattgatgatgacggtacggtgaaaattgcggcaactgac
ggcaatgcagcgaaagcagtaatggctcgtattgaagagatcgttgccgaagtggaagta
aaccaaatctacaacggtaaagtaacccgtgtggtggacttcggtgcattcgtttccatc
ttaggtggcaaagaaggtttagtccacatttcacaaatcaccaacgaacgtgttgagcgt
gtagcggactacttaaccgttggtcaagaagtacaagtgaaagtggtagaaattgaccgt
caaggacgcattcgtctgacgatgaaagacatcaataataccaacgaggcaaatgcagaa
gaaactgtagctgaaaatgtggtagaaacagaacaagaaaataatttctag
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