Mixta hanseatica: K6958_04295
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Entry
K6958_04295 CDS
T08912
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
mhan
Mixta hanseatica
Brite
KEGG Orthology (KO) [BR:
mhan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhan03019
]
K6958_04295 (hrpB)
Enzymes [BR:
mhan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K6958_04295 (hrpB)
Messenger RNA biogenesis [BR:
mhan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K6958_04295 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
HA2_N
AAA_22
AAA_19
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-ProteinID:
UQY44918
LinkDB
All DBs
Position
919802..922243
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AA seq
813 aa
AA seq
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MSELPVSAVLPEVLAALKQAPQVLLAAPTGAGKSTWLPLRLLQQGDIAGRIIMLEPRRLA
ARNVAQRLAEQLGEEPGATVGYRMRADSRVGPATRLEVVTEGILTRMLQQDPMLDGVGLV
ILDEFHERSLQADLALALLLDVQQGLRDDLRLLIMSATLDNARLSARLPAAPLIVSEGRS
FPVERRYASLPAQLPFDEAIAREVAQLLREESGSLLLFLPGVGEIERVKNQLAQRVGSDI
ELCPLYGALPLAAQRRAILPAPPGKRKVVLATNIAETSLTIDGIRLVVDSALERSARFDA
RSGITRLQTQRISQASMTQRAGRAGRLAPGICLHLIGREQAERAAAQSEPEILQSDLSAL
WLDLLQWGCHDAAQLNWIDAPPAPALLAAQTLLRMLGALGENDQLTAQGRAMAKLGSEPR
LAALLTAAHDRDAQATAARLAAILEEPPRQGSRNLLDHLFTPHTGWQQRARQLQKRLNVA
GGHPDAALAPMLLAQAFPDRLARRRGESGRYQLAGGPGAMLDHEDGLTRHEWLIAPQLLQ
GDAQTEARILLALPVDIHTLQRDYPGLVRSETDIEWDEAKATLRAWQRDKIGVLALKSQP
LAKPDVDVLHPAMLRWIREKGLEVLNWTPEAQQLRLRLQCAAQWLPEEKWPAMDDEALLA
TLESWLLPEMRSVRDMKGLRQVSLVGALLHLLTWSQRQRLDSALPTHYTVPTGSRLPIRY
DSEKPPALAVRLQEMFGEAQNPTIAEGRVALVLELLSPAQRPLQITRDLAAFWQGAYPQV
QKEMKGRYPKHAWPDDPASALPTRRTKKYAAPQ
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgaattaccggtaagcgccgtgctgccagaggtgctggcggcgttaaaacaggcg
ccgcaggtattgctggctgcgccgacgggcgcaggtaaatccacctggctgccgctgcgg
ctgttgcagcagggcgacattgccgggcgcattattatgctggagccgcgtcgtctggcg
gcacgtaacgtggcgcagcggttggcggagcaactgggtgaagagcctggcgcaaccgta
ggctatcgcatgcgcgccgacagccgcgttgggcccgccacccggttagaagtggttacc
gaaggtatcctgacgcgtatgctgcagcaggacccaatgttggacggcgtagggctggtt
atccttgatgagtttcatgagcgtagtttgcaggccgatctggcgctggcgctgttgttg
gatgtacagcaggggctgcgcgacgatctgcgtctgttaattatgtccgctacgctggat
aacgcacgcctaagcgcgcgtttgcccgccgcgccgttgatcgtttccgaagggcgcagt
tttccggttgagcgccgctacgccagcctgccggcgcagttgccgttcgatgaggcgatc
gcgcgcgaagtggcccagctgttgcgtgaagagagcggttcactgctgctgtttttgccc
ggcgtcggggaaatcgagcgggtcaaaaaccagctggcgcagcgcgtcggtagcgatatt
gagctgtgtccgttgtatggcgcgctgccgctggcggcacagcgacgggcgattctgccg
gcgccgccgggcaaacgcaaagtggtgctggcgaccaacatcgccgaaaccagcttaacc
atcgatggcattcgtctggtggtggacagcgcgctggagcgctcggcgcgtttcgatgcg
cgcagcggcattacgcggttacaaactcagcgtatcagccaggcctcaatgacgcagcgc
gccggacgcgccggacgtttagcgcccggcatctgtttacatttgatcggccgcgaacag
gcggaacgcgccgccgctcagagcgagccggagatcctgcaaagcgatctcagcgcgctg
tggctggatctgttgcagtggggctgccatgacgccgcgcaactgaactggatcgatgcg
ccgccagcacctgcattgctggcggcgcaaacgctgctgcggatgctgggcgctctgggc
gagaacgatcagctgacggcgcagggccgtgctatggcgaagctgggcagcgagccgcgg
ctggcggcgttattaaccgccgcccacgatcgcgatgcgcaggcgaccgccgcccggttg
gccgctatcctcgaagaaccgccgcgtcagggcagtcgtaatctgcttgatcatctgttt
accccgcatacgggctggcagcaacgcgctcgccagctgcaaaaacggctgaacgtcgcg
ggcggtcacccggacgcggcgctggcgcccatgctgctggcgcaggccttccccgatcgc
ctggcgcgccgacgtggtgaaagcggacgctaccagctggcgggcggcccgggtgcgatg
ctcgatcatgaagatggcctgacgcggcatgaatggctgatcgcgccgcagctactgcag
ggcgatgcgcagaccgaggcgcgtatcctgctggcgctgccggtggatatccatacgctg
cagcgcgactatcccggcctggtgcgtagcgaaaccgatatcgaatgggacgaggccaaa
gccacgctgcgcgcctggcagcgcgataaaatcggcgtgctggcgctgaaatcgcagccg
ctggcgaagcctgacgtggacgtgctgcatccggcgatgctgcgctggatccgcgaaaag
gggctggaagtgcttaactggacgccggaagcgcagcagctgcggcttcgtctgcagtgc
gctgcgcagtggctgccggaggaaaagtggccggcgatggatgatgaggcgctgctcgcc
acgctggaaagctggctgctgccggaaatgcgcagcgtacgcgatatgaaaggtttacgt
caggttagcctggtcggcgctttattacatttgctcacatggtcacaacgtcagcggctg
gatagtgcgctaccaactcattacactgtgccgaccggcagccgtctgccgattcgctac
gatagcgagaagccgcccgcgctggcggtgcgcctgcaggaaatgttcggcgaggcgcaa
aacccgacgattgcggaagggcgcgtggcgctggtgctggagctgttatcacctgcgcag
cggccactgcagatcactcgcgatctcgcagctttctggcagggcgcgtatccacaggtg
cagaaagagatgaagggacgctatcccaaacatgcctggcctgacgatccggccagcgcg
ttacctacgcgccgtaccaaaaaatatgctgcgccgcagtag
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