Mixta hanseatica: K6958_18795
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Entry
K6958_18795 CDS
T08912
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mhan
Mixta hanseatica
Pathway
mhan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mhan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K6958_18795 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhan03021
]
K6958_18795 (rpoC)
03400 DNA repair and recombination proteins [BR:
mhan03400
]
K6958_18795 (rpoC)
Enzymes [BR:
mhan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K6958_18795 (rpoC)
Transcription machinery [BR:
mhan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K6958_18795 (rpoC)
DNA repair and recombination proteins [BR:
mhan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K6958_18795 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
UQY43868
UniProt:
A0ABY4R995
LinkDB
All DBs
Position
complement(3970256..3974479)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNAKGEGMVLTGPKEAERVYRAG
LAELHARVKVRITEYEKNEQGDFIPKTSLIDTTIGRAILWMIVPQGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKVEIITEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRDGEEEKQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVSRNTLLDEHWCDVLEQNSVDSVKVRSVVACETDFGVCAHCYG
RDLARGHIINNGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKL
TNAKSVTNSAGKLVITSRNVELKMIDEFGRTKESYKVPYGATMAKGDGEQVNAGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDTAERTSGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVKISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPIDGSDPYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGVQAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIANAGSSEFLEGEQVEYSRVKIANRDLEANGKVGATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQSGEPTV
APQVSAEEATASLAELLNAGLGGSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcctggtctttcggtgaagtgaaaaag
ccggaaaccattaactaccgtaccttcaagccagagcgtgatggtctgttctgcgcccgt
atcttcgggccggtaaaagactatgaatgcctgtgcggtaagtacaagcgcctgaaacac
cgcggtgttatctgtgagaagtgcggcgttgaagtgacccagactaaagtgcgccgtgag
cgtatgggccacatcgagctggcttccccgactgcgcatatctggttcctgaagtctctg
ccgtcccgtatcggtctgctgctggatatgccgctgcgcgatatcgaacgcgtactctac
ttcgaatcttatgtcgtggttgaaggcggcatgaccaaccttgagaagcgccagatcctg
actgaagagcagtatctggatgcgctggaagagtttggcgacgaattcgatgcgaaaatg
ggcgcggaagcgatccaggcgctactgaaaaatatggatctggagcaggaatgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgagaccaaacgtaaaaagctgaccaagcgt
atcaagctgctggaagcgttcgttcagtctggcaacaagccggagtggatgatcctgacc
gtgctgccggtactgccgccggacctgcgtccgctggttccgctggacggcggtcgtttc
gcgacgtctgacctgaacgatctctatcgtcgcgtcattaaccgtaacaaccgtctgaaa
cgtctgttggatctggctgcgccggacatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggtagatgcgctgctggataacggccgtcgtggtcgcgccattactggctctaac
aagcgtccgctgaaatcgctggctgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgtgtcgactactctggtcgttccgttattaccgtaggtccttac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggagctattcaaaccgttt
atctacggcaagctggagctgcgtggtcttgctaccaccatcaaagccgccaagaaaatg
gttgagcgtgaagaagcggtggtatgggatatcctggatgaggttatccgtgagcacccg
gttctactgaaccgtgcgccgacactgcaccgtctgggtatccaggcctttgaaccggtt
ctgatcgaaggtaaagcgattcagctgcacccgctggtttgtgcggcttataacgccgac
ttcgatggtgaccagatggctgtgcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtcgaccaacaacattctgtctccggcgaacggcgaacctatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgcgacaaagtgaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtgtttaccgcgctggc
ctggccgagctgcatgcgcgcgttaaagtgcgtatcactgaatatgaaaaaaatgagcag
ggcgatttcatcccgaaaaccagcctgatcgatacgactatcggtcgcgccattctgtgg
atgatcgtgccgcagggtctgccttactccatcgtcaaccaggcgctgggtaaaaaggcg
atctccaaaatgctgaacacctgttaccgcattctgggcctgaagccgaccgttatcttt
gctgaccagaccatgtacaccggttttgcctacgcagcccgttcaggcgcttccgtaggt
atcgatgatatggttatcccggcgaagaaagtggaaatcatcaccgaagcggaagcggaa
gtggctgagattcaggagcagttccagtctggtctggtaaccgctggcgagcgctataac
aaggttatcgatatctgggccgcggcgaacgaacgtgttgctaaggcgatgatggaaaac
ctctctaccgaaacggtgatcaaccgtgacggcgaagaggaaaaacaggtttcctttaac
agcatctttatgatggccgactctggtgcgcgtggttccgccgctcagattcgtcagctg
gctggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacggcaaactccggttatctgacccgtcgtctg
gttgacgtggcgcaggatctggtggttaccgaagatgactgtggtacgcatgaaggcatc
atgatgacgccggttatcgaaggtggcgacgttaaagagccgctgcgtgagcgcgttctc
ggccgtgtaacggcggaagacgtactgaagccgggcaccgctgacattctggtatcacgt
aacaccctgcttgatgagcactggtgtgacgtactggaacagaactctgtcgacagcgtt
aaagtccgttctgttgttgcctgtgaaaccgactttggtgtgtgcgcgcactgctacggt
cgtgacctggcgcgtggccacatcatcaacaacggtgaggctatcggcgttatcgcggcg
cagtcaatcggtgagccgggtacacagctgacgatgcgtaccttccacatcggtggtgcg
gcatcgcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtactatcaagctg
accaacgctaagtcggtaaccaactccgctggtaagttggtaattacctcccgtaacgtt
gaactgaaaatgatcgacgaattcgggcgcaccaaagaaagctataaagtgccttacggc
gcaaccatggcgaaaggtgatggtgagcaggtcaatgccggtgaaacggtagcgaactgg
gatccacacaccatgccggttatcaccgaagtgagcggctttattcgctttaccgacatg
atcgacggccagaccattactcgtcaaactgacgaactgaccggtctctcttcgctggtg
gtactggataccgcagaacgtacctctggtggtaaagatctgcgtccggcactgaaaatc
gttgatgctaacggtaacgacgtactgatcccgggcaccgatatgccggcacagtacttc
ctgccgggcaaagcgattgtccagttggaagacggtgtgaaaatcagttctggtgacacg
ctggcgcgtgtgccgcaggaatctggcggtactaaagatattaccggtggtctgccgcgc
gttgctgacctgttcgaagcgcgtcgtccgaaagaacctgcgatcctggctgaaatcagc
ggtatcgtttccttcggtaaagagaccaaaggcaagcgtcgcctggtgatcacgccgatc
gatggtagcgatccatacgaagagatgattccgaaatggcgtcagctcaacgtattcgaa
ggtgagcgcgtagaacgtggtgacgtgatctccgatggtccagaatcaccgcatgacatt
ctgcgtctgcgtggcgttcaggctgtgacccgttacatcgttaacgaagtgcaggacgta
taccgtctgcagggcgttaagattaacgataaacacatcgaagttattgtgcgtcagatg
ctgcgtaaagcaaccatcgccaacgcgggcagctccgagttcctggaaggcgagcaggta
gaatactcacgcgtgaagattgccaaccgcgatctggaagccaacggcaaagtgggcgca
acttacgctcgcgatctgttgggtattaccaaagcgtcactggcaaccgaatcgttcatc
tctgcagcatcgttccaggaaaccacccgtgtcctgaccgaagcggcagtagcaggcaaa
cgcgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccggctggt
accggttatgcttaccatcaggatcgtatgcgtcgccgccagtctggcgagccgaccgtg
gcgcctcaggttagcgcagaagaagcaacggccagcctggccgagctgctgaacgctggc
ctcggtggtagcgacgacgagtaa
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integrated database retrieval system
