Miniphocaeibacter halophilus: JFY71_07570
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Entry
JFY71_07570 CDS
T08075
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mhap
Miniphocaeibacter halophilus
Pathway
mhap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mhap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JFY71_07570 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhap03021
]
JFY71_07570 (rpoC)
03400 DNA repair and recombination proteins [BR:
mhap03400
]
JFY71_07570 (rpoC)
Enzymes [BR:
mhap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JFY71_07570 (rpoC)
Transcription machinery [BR:
mhap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JFY71_07570 (rpoC)
DNA repair and recombination proteins [BR:
mhap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JFY71_07570 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QQK07182
UniProt:
A0AC61MNR7
LinkDB
All DBs
Position
1549408..1552971
Genome browser
AA seq
1187 aa
AA seq
DB search
MEEINTFDSLKIGLASPEKIRQWSYGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
NCGKYKRIRYKGVICEKCGVEVTKSKVRRERIGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEKILYFASYVVIDAGDTDLFNKQLLTEYEYNEACDRYTEGVDFKAGMGAEAVKEL
LLLVDLEKEYEELKEALGTATGQKKIRIVRRLEVVEAFRQSGNRPEWMILEAVPVIPPDL
RPMVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDIGAPDIIVRNEKRMLQEAVDALIDN
GRRGKPVTGPGNRPLKSLSDMLKGKTGRFRQNLLGKRVDYSGRSVIVVGPNLKFYQCGLP
KKMALELFKPFVMKELVQRGISHNIKNAKKMVERENEKVWDVLESVIKDHPVLLNRAPTL
HRLGIQAFEPVLVEGKAIKLHPLVCTAYNADFDGDQMAVHLPLSVEAQAEARLLMMSTNN
ILAPKDGRPITTPSQDMVLGAYYLTSDAEESDNIRTYQDYNEMIRAHENKIISLHSKVKV
RVKCSPDDRGKLVESTVGRFIFNEGIPQDLGYVNREVDKYSLEVDKLVDKKTLGDIIDRC
FRKHGNIGTAIILDYIKSIGYKYSTIAAITISMGDIEVPVEKDEILNEADKEVSKYEKLL
RKGLVSEDERYEFVIDIWNKATDDVTGALLKDLDPKNNLAIMANSGARGSTNQIRQLAGM
RGLMSSAAGRTIEIPIRANFREGLSVQEFFISTHGSRKGLSDTALRTADSGYLTRRLVDV
SQDIIVREDDCGTDRYVLAKDFTEGKEVIEDMSSRIIGRTAFEDILNLETGELVVQKNEI
ITEDIADKIKELGITEVKVRSVLGCKLDHGVCAKCYGRNLATGKPVNIGEAVGIIAAQSI
GEPGTQLTMRTFHSGGIAGVGITQGLPRVEELFEARKPKGLAYITEIAGTVQIVDNKKRH
DILVTGDDGEEKIYAIPYGARIRVKDGEYIEKGDLLTEGSVNPHDILAVKGPEGVQDYIT
KEVQKVYRLQGVDIDDKHIEIIIKQMLSKVKIEDSGDSEFLEGSMVSLREFEIINEKLNN
EGKVPASGSRTLLGITKASLATDSFLSAASFQETTRVLTDAAIKGKEDHLLGLKENVIIG
KLIPAGTGVRKYNKIDIDYEGKIEEEPGNEEDNENLSDLLQVDSKEQ
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
ttggaagaaataaatacttttgattcgttaaaaataggtttagcttctccggaaaaaatt
agacaatggtcttatggagaagtaaaaaagccggaaacaattaactacagaactttaaaa
ccggaaaaagaaggactattttgtgaaaaaatatttggtcctactaaagactgggaatgt
aactgtggaaaatataaaagaataagatataaaggtgtcatttgtgaaaaatgtggtgtt
gaagtaactaagtccaaagttcgtagggaaagaattggacacattgaattagctgcaccg
gtttctcatatatggtattttaaagggattccatctagaatgggtttacttctagacatg
agtcctagagccttagaaaaaatattatactttgcaagttatgttgttatagatgcagga
gatactgatttattcaataaacaattattaacagagtatgagtataatgaagcttgcgat
agatacacagagggtgtagactttaaagctggtatgggtgctgaggcagttaaagagtta
ctacttttagtagacttagaaaaagaatatgaagaactaaaagaagctcttggaactgca
acaggacaaaagaaaataagaatagttagaagattagaagtagtagaagcttttagacaa
tcaggtaatagaccggaatggatgatattagaagcagttcctgtaattccaccggattta
agaccaatggttcaattagaaggtggaagatttgcaacttctgacttaaatgatctttat
agaagagtaataaatagaaacaatagattaaaaagacttcttgatattggagcaccggac
attattgtaagaaatgaaaaaagaatgttacaagaagccgtagatgctttaattgataat
ggaagaagaggtaagcctgttacaggtccaggaaatagaccgctaaagagtttgtcagat
atgcttaagggtaaaaccggtagatttagacaaaacctactaggaaaaagggttgactat
tcaggacgttctgtaatagtagttggaccaaatttgaaattctatcaatgtggtttacct
aagaaaatggccttagaattatttaaaccttttgttatgaaggaattagttcaaagaggt
atttctcataatataaaaaatgctaagaaaatggtagaaagggaaaatgaaaaagtatgg
gacgtattagaatcagttataaaagatcatcctgtactattaaacagagcccctactttg
catagactgggaattcaggcatttgaaccggtactagttgaaggaaaggctataaaactt
catccattagtttgtactgcttacaatgcagactttgatggtgaccaaatggctgtccat
ttaccattatctgtagaagcccaagcagaagcaagattattgatgatgtccactaataat
attttagcaccaaaagatggtagaccaataactactccttcacaagatatggttttaggt
gcatattatttaacatctgatgctgaagaatcagacaacattagaacttaccaagactat
aatgaaatgataagggcacatgaaaacaaaataatttcactacattccaaagttaaggtc
agagtaaaatgttcaccggatgatagaggaaaattagttgaatcaactgttggtagattt
atattcaatgaaggaattcctcaagatttaggatatgtaaacagagaagttgataaatat
tctttagaagttgacaagctagttgataagaaaacattaggggatataattgacagatgt
tttagaaaacatggaaatattggtacagcaataattttggactatattaaatccatagga
tataaatattcaactatagcagcaataacaatatccatgggtgatattgaagttccagtt
gaaaaagatgaaatattaaatgaggccgataaagaagtttctaaatatgaaaaattatta
agaaaaggtcttgtatcggaagatgaaagatacgaatttgtaatagatatttggaataaa
gcaacagacgatgtaacaggtgctttattaaaggatttagatccgaaaaataacttggct
ataatggctaattctggagcgagaggttcaactaaccaaattagacagttggctggaatg
cgtggattaatgagttctgcagcaggtagaacaatagaaatacctataagagcaaacttt
agggaaggcttatctgtacaggagttctttatttcaactcacggctctagaaagggatta
tcggatacggcattaagaacagctgactccggatatttaacaagacgtttagtcgatgtt
tcacaggatataatagttagagaagatgactgtggaacagacagatatgtactagctaaa
gactttactgaaggaaaagaagttatagaggatatgtcttctagaattattggtagaaca
gcttttgaagatattttaaatcttgaaactggagaactggtagtacaaaaaaatgaaatc
attacagaggatatagccgataaaattaaggaactaggtattacagaagttaaagtaaga
tcggtattaggatgtaaattagaccacggtgtatgtgctaaatgttatggtcgtaacttg
gctactggtaaacctgtaaatattggagaagctgttggaattattgcagcccaatcaata
ggtgagccgggaactcaattaacaatgagaacattccactccggtggtattgcaggagta
ggaataactcaaggtcttcctagggttgaagagctttttgaagcaagaaaacctaaagga
cttgcatatattactgaaatagcaggaacagtgcaaatagtagataataagaaaagacac
gacattcttgttaccggtgatgatggcgaagaaaaaatctatgctataccatatggagca
agaataagagtaaaagacggtgaatatattgaaaagggagatcttttaacagaaggttca
gtaaacccacacgatatattagctgtaaaaggaccagaaggtgttcaggactatattact
aaggaagttcaaaaggtttatagacttcaaggtgttgatatagatgacaaacatattgaa
ataataataaaacaaatgttgtctaaagtgaaaattgaagattctggtgactctgaattc
ttagaaggaagtatggttagtctaagagaattcgaaataataaatgaaaaattgaataat
gaaggaaaagttccagctagtggttctagaacattgttaggtattacaaaggcatcctta
gctacagattcatttttatcagcagcatctttccaagaaactacaagagttttaacagat
gcggcaattaaaggtaaggaagatcaccttttaggattaaaagaaaatgtaattataggt
aaattaataccagcaggtactggcgtaagaaaatataataagatagatattgactacgaa
ggaaaaattgaagaagaacctggaaatgaagaagataatgaaaatttatcagatttatta
caagtagattcaaaggaacagtaa
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