Mannheimia haemolytica 89010807N: WC39_02625
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Entry
WC39_02625 CDS
T03749
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mhaq
Mannheimia haemolytica 89010807N
Pathway
mhaq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhaq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WC39_02625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhaq03019
]
WC39_02625
03009 Ribosome biogenesis [BR:
mhaq03009
]
WC39_02625
Enzymes [BR:
mhaq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
WC39_02625
Messenger RNA biogenesis [BR:
mhaq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WC39_02625
Ribosome biogenesis [BR:
mhaq03009
]
Prokaryotic type
rRNA processing factors
WC39_02625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
KH_11
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AKA12695
LinkDB
All DBs
Position
509005..511938
Genome browser
AA seq
977 aa
AA seq
DB search
MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAE
RHGFLPLKEISREYFPSDYVFNGRPNIKDIIQEGQEVIVQVSKEERGNKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWD
LKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKVFEKAKNH
IRLVRPDFINRVKLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDI
NSSRSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIR
EATRQDRARIQFARISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKVRDNESIALSIL
RLLEEEAIKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQIVVVPSESMETPHFS
VYRLRENEITPTLSYDLTKHYEARHEEEHPHHHHQEDVLVTRNEPVITVESVLQSSELNL
QPSPTPTEPPKPSLLSRLIATIKGWFSEEKVEEKPKPKARNQRERRQRRERPNRNAKAEN
QERKTPQAQTTPAEEKPMRSEKKARRAVVEEVSGVTEQESRSNSREVQTERRQRRDLRKK
VRIETQEVEVENLTPAVEETVAKQVENVQKNQQIQPLATQEVPVETAPEVETTNEGRENN
RQRRLPRHLRVGNQRRRENQRNQVISPMPLTSAVASPELASGKVWVQVTSTVKVEEKASF
LSVDQMLEQQENQLVETEKKSEEKKLHTVSPLGGFVAQATNRDLVKEKQEQLSKPKEEKV
ASEDVKPVEVKEHIAPFGSVVAQHSERDLVKEKNERVSKFQSQATVAPAIVEEVTNPIEV
PKSTYESDYRFNGRLGTFSRVEHTQAAMTIASAPSDKLEVVEISQWQNSKYYFYGKGFGG
YTSAVSQVQSAPRSTNG
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgttaatcaatgcaactcaaaaagaagagttgcgtgttgccctcgttgatgggcaacgc
ttatttgacttggacattgaaagcccgggtcacgaacagaaaaaatccaatatctacaag
ggtaaaattacccgtgtcgaaccaagccttgaagctgcattcgtagattacggtgcagaa
cgccacggcttcctacctttaaaagaaatttcccgagaatacttcccgtcagactatgtg
tttaacggtcgcccgaatatcaaagatattattcaagaagggcaagaagtgattgttcaa
gtcagcaaagaagagcgtggtaacaaaggagcagccttaaccacctttatttcgcttgcg
ggcagttacttagtcttaatgccgaacaaccctcgtgccggtggtatttcccgccgtatt
gaaggtgatgagcgtttagaactcaaagaggctttagactgcttagatgtaccggaagac
gtgggcttaatcgttcgtaccgccggtgtcggcaaatcgccggaagagttacaatgggac
ttaaaagtcttgttacaccactgggaagcgattaaaaaagcggcggaatctcgcccagct
ccgttcttaattcaccaagaaagtgacgtgattgtgcgtgcaattcgtgactatctacgc
cgtgatattggcgaaatcttaatcgacaacaaaaaagtgttcgagaaagccaaaaaccac
attcgccttgttcgcccggatttcatcaaccgtgtgaaattatacgaaggcgaagtacca
ctattcagccactatcaaattgaatcgcaaatcgaatcggcattccaacgtgaagtgcgt
ttaccttccggtggctctatcgttattgatgtaacagaagccttaacagcaattgatatt
aactcctcacgttcaacccgtggcggcgatattgaagaaaccgctcttaacaccaactta
gaagcggcagatgaaattgcccgtcagttacgtttgcgtgacttaggtggtttgattgtg
atcgactttatcgatatgacaccggttcgccaccaacgtgaagtagaaaaccgtattcgt
gaggcgacacgccaagaccgtgcgagaatccaatttgcccgtatttcccgtttcggtttg
ttagaaatgagccgtcagcgtttaagcccatcattaagtgaggcttcatcgcatatctgc
cctcgctgtcagggaactggtaaagtacgtgataatgaatcaatcgcactgtcaatctta
cgtttattagaagaagaggcaatcaaagaaaacactgcacaggttcacaccattgtgccg
gtgcaaatcgccagctacttactcaacgaaaaacgtaaagcgatttccagcattgaaaaa
cgccacgatgtacaaattgttgtagtaccgtctgaaagtatggaaacgccgcatttcagc
gtatatcgcctgcgtgaaaatgaaattactccaacgttaagctacgatttaaccaagcat
tacgaagctcgtcatgaagaagaacacccacatcatcaccatcaagaagatgtgctggtt
acccgtaacgagccggtgattacggtagagtcagtgttacaaagctcggagctgaatctc
caaccttcgccaacaccaaccgaaccaccaaaaccatcgctgttaagccgcttaattgcg
accattaaaggctggtttagtgaagaaaaagtggaagaaaaaccgaagccgaaagcacgc
aatcagcgtgagcgtcgccaacgccgtgaacgcccgaaccgtaatgctaaagcggaaaat
caagagcgtaaaactccgcaagctcaaactactccagcggaagaaaaaccgatgcgtagc
gagaaaaaagcacgccgagcggtagtggaagaagtttccggtgtaaccgagcaagagagt
cgtagcaactcccgtgaggttcaaactgaacgtcgccaacgccgtgatctacgtaaaaaa
gtgcgtatcgaaacacaagaagtagaagtggaaaatctaacacctgctgttgaggaaacg
gtggcaaaacaagttgaaaatgtgcaaaaaaatcaacaaattcaaccgcttgcaacccaa
gaagtacctgttgaaacagctcctgaggtagaaacaacgaacgaaggacgtgaaaataac
cgccaacgccgtttacctcgccatttgcgtgtgggcaatcagcgtcgtcgtgaaaatcaa
cgcaatcaggttatttctcctatgcctctaacttcagctgttgcttcgcctgagcttgcg
agcggtaaagtttgggttcaggttacctctactgtcaaagtagaggaaaaagcatcattc
ttatctgttgatcaaatgcttgaacagcaagaaaatcagcttgttgagacagagaaaaaa
tcagaagagaagaagcttcatacagttagtccgctaggtggctttgtagcacaagcaact
aaccgtgatttggttaaggagaagcaagaacagctttccaaaccgaaagaagaaaaagtt
gcttctgaagacgtaaaaccagtagaggtaaaagagcatattgctccatttggtagtgtt
gttgctcagcattctgaacgtgatttagttaaagagaaaaatgagcgagtcagtaaattc
caatcgcaagcaacggttgcaccagcgattgtggaagaggttactaacccgattgaagtg
ccaaaatcaacttacgaaagcgattatcgatttaacggcagattaggtacattctctcgt
gttgagcatacccaagccgctatgaccattgcttctgcaccaagtgacaagcttgaagta
gtcgaaattagccaatggcaaaactctaaatactatttctatggcaaagggtttggcgga
tataccagcgcagtgagccaagtgcagtcagcgcctcgttcaaccaatggttaa
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