Mariluticola halotolerans: L1P08_04340
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Entry
L1P08_04340 CDS
T09219
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mhar
Mariluticola halotolerans
Pathway
mhar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L1P08_04340 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhar03019
]
L1P08_04340 (rnr)
03016 Transfer RNA biogenesis [BR:
mhar03016
]
L1P08_04340 (rnr)
Enzymes [BR:
mhar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
L1P08_04340 (rnr)
Messenger RNA biogenesis [BR:
mhar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L1P08_04340 (rnr)
Transfer RNA biogenesis [BR:
mhar03016
]
Prokaryotic type
tRNA degradation factors
L1P08_04340 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
UJQ95222
LinkDB
All DBs
Position
924407..926647
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AA seq
746 aa
AA seq
DB search
MSKSRQVAPGALPSREDILDALANEPSVKGKRDLARVFGVRGDMRTPFKLLLRDMENEGL
IARSRKTLRRAAELPSVTVLEIPTEADPEAMIAFPASWNEAEDGPRPLVNIETPKNARVA
PAPGDRILARITSDEAMPPRYTGQAMKILDKPRSGHIGIVRMDDDGARLVPVDRKQKEMR
IPQGDLGDAKDGDLVEVDVTLSGRLMLPRAKVTNVIGNPASEGAVSMIALHNLEIPYRFP
DSVIAESEAVKDVGLKGREDWRDMPFVTIDPASAKDHDDAIYAEADTDPKNIGGHVVYVA
IADVAAYVRPGSALDKEAYLRGNSVYFPDRVVPMLPERISNDLCSLREGENRPSMAVRMV
FGSDGRKRDHSFHRVTIRSAAKLAYEQAQAAMDGKPDDVTAPLVTPILTPLWAAYGAMAA
ARDKRGPLDLDLPERKIILNEDGTVQRVHVPPRLEAHRLIEEMMIAANVCAAETLERQHM
PLLYRVHDVPGREKLIALRDFLSSLKMSFSKSDAVRPTHFNEVLRKAKDSNKSEQVSEMV
LRSQAQAEYSAENFGHFGLNLDRYAHFTSPIRRYADLIVHRALITALKLGKDGSNPEDAA
GLPGIAQHISTTERRAMLAERETNDRLLAQYMAGHMGAKFEGRISGVTKSGLFVRLSDTG
ADGFIPASTLGSDYYRYVEEQQAMIGERTGERFQLGENVTVRLLEAAPVAGALRFELLSE
GERVTPPGGRGGRRKPSFSRGKRRKK
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaaatcgcgccaggttgcgcccggcgccttgcccagccgtgaggacattctggac
gcgctggccaatgaacccagcgtcaagggcaagcgcgatctggcgcgggtctttggtgtg
cgcggtgacatgcgcaccccgttcaagctcctgctgcgtgacatggaaaacgaggggctg
attgcccgctcacgcaagactttgcgccgggcggcagaactgccctcggtcactgttctt
gaaattcctaccgaagccgatcccgaagccatgatcgcctttccagccagctggaacgag
gcggaagacgggccgagaccattggtcaatattgagacccccaagaatgcacgggtggca
ccggcccccggcgaccgtattctggcgcgcattaccagcgatgaagccatgccgccgcgc
tataccggccaggcgatgaaaatcctcgacaagccccggagcgggcatatcgggattgtg
cgcatggacgatgatggggcgcgtctggtgcccgttgatcgcaagcagaaggaaatgcgc
attccgcagggagacctgggtgacgccaaggatggcgacctagttgaggtggatgtgacg
ctttcgggccggctgatgctgccacgggccaaggtgaccaatgtcattggcaacccggcc
agcgagggcgctgtgtcgatgatcgcgctgcataatctggaaattccctatcgctttccc
gattcggtgattgccgagagcgaagcggtgaaggacgtggggctcaagggccgcgaagac
tggcgggacatgccgttcgtcaccattgatccggcttccgccaaagatcatgatgacgcg
atctatgcagaggccgataccgatccgaagaatattggcggccatgtggtttacgtggcg
attgccgatgtggcggcctatgtccgccccggctcggcgctcgacaaggaagcctatctg
cgcggcaattcggtgtattttcccgaccgggtggtaccgatgctgccggagcggatttcc
aatgacctctgttcgctacgcgagggcgagaaccgcccttccatggccgtgcgcatggtt
tttggttccgatgggcgcaaacgcgaccacagttttcaccgggtaacgatacgttcggct
gccaaactggcctatgaacaggcacaggctgcgatggacggcaagccggatgatgtgaca
gcgccactggttacaccgatcctgaccccgctctgggccgcctatggcgccatggcggcg
gcacgcgacaagcgcggaccgctcgatctggacctgcccgagcgcaagatcatcctcaat
gaggatggcacggtgcagcgcgtgcatgtgccgccccggctggaagcgcatcgcctgatt
gaggaaatgatgatcgcggccaatgtgtgcgcggcggaaacgctggaacgccagcatatg
cccctgctctatcgcgtgcatgatgtgccgggccgcgaaaagctgattgcgcttcgggat
tttctgtcgtcgctgaaaatgtcgttttcgaaatcggatgcggtgcgcccgacccatttc
aatgaagtgctgcgcaaggccaaggacagcaacaagtccgagcaggtctccgaaatggta
ttgcgctcacaggcgcaggcggaatattcggcggagaatttcggccatttcgggcttaat
ctcgaccgctatgcccatttcacctcgccgatccggcgctatgccgatctgatcgtgcat
cgggcgctgatcaccgcgctcaaactgggcaaggacggctccaatcctgaggatgccgcc
gggctgccgggtattgcccagcatatttcgaccaccgaacgccgggccatgctggcggaa
cgtgaaaccaatgaccgtttgctggcgcaatatatggccgggcatatgggggcaaagttc
gagggccggatttccggcgtgaccaaatcaggcctgtttgtgcgcctcagcgataccggc
gcggacggctttattcccgcctcaacccttggcagcgactattaccgctatgtcgaggaa
cagcaggcaatgatcggcgaacgcaccggcgaacgcttccagttgggcgagaatgtaacg
gtgcgtctattggaagcagcgcccgtggctggcgctttgcgttttgagctattatctgaa
ggggaacgggttaccccgccggggggacgcggtggcagacgaaagccatctttttcccgc
ggcaagcgcagaaagaagtag
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