Mariluticola halotolerans: L1P08_04725
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Entry
L1P08_04725 CDS
T09219
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mhar
Mariluticola halotolerans
Pathway
mhar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mhar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L1P08_04725 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhar03021
]
L1P08_04725 (rpoC)
03400 DNA repair and recombination proteins [BR:
mhar03400
]
L1P08_04725 (rpoC)
Enzymes [BR:
mhar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L1P08_04725 (rpoC)
Transcription machinery [BR:
mhar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L1P08_04725 (rpoC)
DNA repair and recombination proteins [BR:
mhar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L1P08_04725 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
ApbA_C
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UJQ95296
LinkDB
All DBs
Position
complement(989979..994193)
Genome browser
AA seq
1404 aa
AA seq
DB search
MNHHHHVMDPFNPQAQAQTFDQMKVNIASPEKILSWSYGEIKKPETINYRTFKPERDGLF
CARIFGPTKDYECLCGKYKRMKFKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFL
KSLPSRIALLLDMTLKDVERILYFEYYVVTEPGLTAFGQYELLSEEQYIDAQDQYGADSF
TAMIGAEAIREMLMSLELEKIADQLRVEIAEATTELKPKKLAKRLKIVEQFIVSGNKPEW
MIMTIIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLIELRAPDIIIRNEK
RMLQEAVDALFDNGRRGRTITGANKRPLKSLSDNLKGKHGRFRQNLLGKRVDYSGRSVIT
VGPELKLHQCGLPKKMALELFKPFIYSRLEAKGFSSTVKQAKKLVEKEKPEVWDILDEVI
REHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEA
QLEARVLMMSTNNILHPANGQPIIVPSQDIVLGLYHLSLMNDNEPGEGMAFGNIGELEHA
LATGTVTMHTKIKGRVKRVDAEGNVTTEVVETSPGRMLIGQLLPESVAVPFEVCNQVMTK
KMVSKMIDTVYRGCGQKETVIFCDRIMDLGFKHACRAGISFGKDDMVIPDTKAGIVEATR
KQVEEFEQQYNDGLITQGEKYNKVVDAWAKCGDKVADEMMARISAVDVDAETGRQKPINS
VYMMAHSGARGSPAQMKQLAGMRGLMARPDGSIIETPITSNFKEGLTVMEYFNSTHGARK
GLADTAMKTANSGYLTRRLVDVAQDSIITEIDCGTDRGLAMEAVVDSGQIVASLGQRILG
RTTADDIVDPATGEVIAPRGTLLDEALVDAIEAAKVQTTRIRSPLTCDIRQGVCAACYGR
DLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVVDSSFFEASVEGKVEIRN
RNVVKLADKSLIAMGRNVMVAIIDSEGNDRVVHRVAYGAKIRVDDGDEVKRGQRLAEWDP
YTRPILAEVEGEVAFEDLIDGNSVSEQTDEATGFTKRVVIDWRTSQRGDGLRPALAVARG
GEVVKLDRGGEARYLLSVDAVIAVEPGEKVAPGDVLARIPLESAKTKDITGGLPRVAELF
EARRPKDHAIIAEIDGTIRFGRDYKNKRRIIIEPEDATMEPAEYLIPKGKPFHLQEGDTI
ERGEYILDGNPAPHDILAIKGVEELARYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKV
EITDPGESGLLKDEQIDKVDFDELNEELIAEGKKPAHGVPVLLGITKASLQTRSFVSAAS
FQETTRVLTEAAVSGKADLLEGLKENVIVGRLIPAGTGAGISQVKHIAGKRDDLILEERR
RQAESVKLEAPVADSPEPQEEPAE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatcatcaccacgtcatggaccccttcaatccgcaggctcaggcgcagactttt
gaccagatgaaggtcaatatcgcgagcccggagaagatcctttcctggtcgtacggcgaa
atcaaaaagccggaaaccatcaactaccgtacgttcaagccagaacgcgacggcctgttc
tgtgcacgcatctttggcccgaccaaggattacgaatgcctttgcggcaagtacaagcgc
atgaagttcaagggcgtcatctgcgagaagtgcggcgttgaagtcacattgtcccgcgtt
cggcgcgagcgcatgggccatatcgaactcgcggcacccgtggcgcatatctggttcctg
aagtcgttgccgtcccgcatcgcgcttctgctggatatgacgctcaaggatgtcgagcgc
atcttgtactttgagtactatgtggtcaccgagccgggtcttacagcctttggtcagtat
gaattgctgagcgaagagcagtatatcgacgcccaggaccagtatggtgccgacagcttc
accgccatgatcggtgctgaagccattcgcgaaatgctgatgtcgctcgagctggaaaag
atcgccgatcagctgcgcgtggaaattgccgaggcaaccaccgaactgaagccgaagaaa
ctggccaagcgcctgaagatcgttgagcagttcatcgtttcgggcaacaagcctgaatgg
atgatcatgacgatcattccggtcattccgcccgaactgcgtccgcttgtgccgctggac
ggtggccgtttcgcgacctcggatctcaacgatctttatcgtcgtgtgatcaaccgcaac
aaccgtctgcgtcgtctgatcgaattgcgtgcaccggatatcattatccgcaacgaaaag
cgcatgctgcaggaagccgttgacgccctgttcgacaacggtcgccgtggccgcaccatc
accggtgcgaacaagcgtccgctcaagtcgctctcggacaacctcaagggcaagcacggc
cgtttccgccagaaccttctgggcaagcgcgtcgattattccggccgttcggttatcacc
gtgggtccggaactcaagctgcaccagtgtggtctgcccaagaagatggcgctcgaactg
ttcaagccgttcatctactcgcggctggaagccaagggcttctcctccacggtcaagcag
gccaagaagctggttgaaaaggaaaagcccgaagtctgggatatccttgacgaagtgatt
cgtgagcatccggttctgttgaaccgcgcgcccacccttcaccgtctgggcatccaggcc
ttcgaaccgatcctgatcgagggcaaggccatccagctgcatccgctggtatgtacagcg
tttaacgccgactttgacggcgatcagatggctgttcacgtgccgctgagccttgaggcc
cagctggaagcccgcgtgttgatgatgtcgaccaacaacattctgcaccccgccaatggt
cagccgatcattgtgccctcgcaggatatcgttctcggcctctatcacctcagcctgatg
aacgacaacgagccgggcgaaggcatggccttcggcaatatcggcgagctagagcatgct
ctggccaccggtacggtcacgatgcacaccaagatcaagggccgtgtcaaacgggtcgat
gccgaaggcaatgtcacgaccgaagtggtcgagacctcgccgggccgtatgttgatcggt
cagttgctgcctgagagcgttgcagtgcctttcgaggtctgtaaccaggtcatgaccaag
aagatggtctccaagatgatcgacacggtttaccgtggctgtggtcagaaagagaccgtg
atcttttgtgaccgcatcatggatctcgggttcaagcatgcgtgccgcgccggtatttcg
ttcggcaaggacgacatggttatccccgacaccaaggctggcatcgttgaggcgacccgc
aagcaggtcgaggaattcgagcagcagtacaatgacggtctcatcacccagggcgagaag
tacaacaaggttgtcgacgcctgggccaagtgcggtgacaaggttgccgacgagatgatg
gcccgcatttctgcggtcgatgtcgatgcggaaacaggacgtcagaagccgatcaactcg
gtttacatgatggcccattccggtgcgcgtggttcaccggcccagatgaagcagcttgcc
ggtatgcgtggtcttatggcccgtccggatggctcgatcattgaaacgccgatcacgtcg
aactttaaggaaggtctgaccgtgatggagtacttcaactccactcacggtgcccgtaag
ggtctggctgataccgccatgaagactgctaactccggctatctgacccgtcgtctggtg
gacgtggcccaggattcgatcattaccgagattgattgcggtacagatcgtggcctggcc
atggaagcggtcgtcgattcaggtcagatcgtggcctcccttggccagcgtatcctcggc
cgtaccacggcagacgatattgtcgacccggcaacgggcgaagttatcgcaccccgtggc
acattgctcgacgaagcgcttgtcgatgccatcgaggcggcaaaggtccagacgacccgc
atccgctcgccgctcacctgtgacatccgtcagggtgtctgtgcggcttgctacggacgt
gatcttgcccgcggtactccggtcaatatcggtgaagctgtcggcgttatcgctgcacag
tccattggtgagccgggcacccagctgaccatgcgtaccttccacattggtggtacggca
caggttgtcgatagctcgttctttgaggcaagcgtcgaaggcaaggtcgaaatccgtaac
cgcaatgtcgtgaagctggctgacaagtcgctgatcgccatgggccgcaacgtcatggtc
gctatcattgatagcgaaggcaatgaccgcgttgtccaccgtgtggcttatggtgccaag
atccgtgtcgatgacggtgacgaggtcaagcgcggtcagcgtctggccgagtgggatcca
tacacccgtccgatcctcgctgaagttgagggcgaagtggcctttgaggacctcatcgac
ggcaattcggtctccgaacagaccgacgaggcgaccggctttaccaagcgtgttgttatc
gactggcgcaccagccagcgcggtgacggcctgcgcccggcactggcagtcgcccgcggc
ggtgaagtggtcaagctcgatcgtggtggcgaagcccgctacctgctctcggtggatgcg
gttattgccgttgagcccggcgagaaggtggcaccgggtgacgtgctggcacgtattccg
ctcgaaagcgccaagaccaaggacatcaccggtggtctgccgcgtgtggccgaactgttc
gaagcccgtcgtcccaaggatcacgccatcatcgccgagatcgatggtaccatccgcttt
ggtcgcgactacaagaacaagcgccgcatcatcatcgagcctgaagatgcgacgatggaa
cccgctgagtatctgatccccaagggcaagccattccaccttcaggaaggcgataccatt
gagcggggtgaatatattctcgacggcaatccggcaccgcatgacattctggcgatcaag
ggcgtcgaggagcttgcacgctacctcgtcaacgagatccaggaagtctatcgcttgcag
ggcgtgttgattaacgacaagcacatcgaggtgatcgttcgccagatgctgcaaaaggtc
gaaatcaccgatccgggcgaaagcggcttgctgaaagacgagcagatcgacaaggtcgat
ttcgacgagctcaacgaagagctgattgccgaaggcaagaagccagctcatggcgtgccg
gttcttctcggtatcaccaaggcatcgttgcagacccgttcgtttgtgtcggccgcctcg
ttccaggaaaccacacgcgtgctcacagaagccgcggtttccggcaaggccgatcttctc
gaaggtctcaaggaaaacgtcatcgtcggccggctcattcctgccggtaccggtgcaggc
atctcgcaggtcaagcatattgccggcaagcgtgatgacctcatccttgaagagcgtcgc
cgtcaggcggaatcggtcaaactggaggcacccgttgccgacagccccgagccgcaggaa
gagcctgccgaatag
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integrated database retrieval system
