Mycolicibacterium hassiacum: MHAS_03294
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Entry
MHAS_03294 CDS
T05715
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mhas
Mycolicibacterium hassiacum
Pathway
mhas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mhas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MHAS_03294 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhas03400
]
MHAS_03294 (mfd)
Enzymes [BR:
mhas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MHAS_03294 (mfd)
DNA repair and recombination proteins [BR:
mhas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MHAS_03294 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
Cas3-like_C_2
ResIII
LSDAT_prok
DUF3638
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
VCT91578
LinkDB
All DBs
Position
1:complement(3480890..3484555)
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AA seq
1221 aa
AA seq
DB search
MTASGHPHVQTPIAGLVDLALRDPALQEVAARAADRPAELSLVGPASARVFVAAALAQSG
PLLVVTATGREADDLTAELKGVFGDEVAMFPSWETLPHERLSPSVETVGARLMVLRRLAC
PDDARLGPPLRIVVAATRSLVQPMPQRPDDLSATEPVILTVGEEADFDAVVTRLVELAYT
RVDMVGRRGEFAVRGGILDVFPPTAEHPVRIEFWGDEVSEMRMFSVADQRSIPEIGIDTM
IALPCRELLLTDEVRKRAVKLAEEHPKRDNTLPGTVPDMLAKLAEGIPVDGMEALLPLLR
PGELSLLVQHLPAGTPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAIGGDAPIDLEAL
GASGFLDLEQAHTAAVEAGHPWWTLSQLASESAVELELKPAPSARSHTAIDEIFAMLRAH
VATGGYAAVVTPGTGTAQRVREQLAESEVPAALLDPGAAPKPGVVGVLKGPLHDGLVLPG
VNLVIITETDLTGHRVTAVEGKKLAAKRRNVVDPLALTKGDLVVHDQHGIGRFLEITERV
VGGARREYVVLEYASNRRGGGTDKLYVPMDSLDQLSRYVGGENPALSRLGGSDWANTKNK
ARKAVREIAAELVQLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTAIQEVKADM
EKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTERMAGF
PVTIKALSRFTPPAESRAILEGMRDGSVDIVIGTHRLLQTGVTWKDLGLVIVDEEQRFGV
EHKEHIKSMRTHVDVLTMSATPIPRTLEMALAGIREMSTILTPPEERYPVLTYVGPYDEK
QVAAALRRELMRDGQAFYIHNRVRTIDQAAARVRELLPEARVVVAHGQMPEEQLEKTVEG
FWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLY
PPDVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDLYV
RLVGEAVEAYRAAADGKTVTTPTEPKDVRIDLPVDAHLPPDYIASDRLRLEAYRRLAAAP
DDAGIDAVVEELVDRYGPLPDPAVRLVATARLRLLCRRYGVTEVSAMSAATVRISPLELA
DSQQVRLKRLYPGASYRATTTTVQVPIPRAGEGLGAPRIRDEELVRMVAGLLLALDPDGA
QDVDISKFGGAAVTDDKRASR
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcatcggggcacccccatgtccaaaccccgattgcggggctggtggatctggca
ctacgcgacccggcgctgcaggaagtcgccgcccgagccgccgaccgtccggccgaactt
tcgctggtgggccccgcctccgcacgggtgtttgtcgcagccgcacttgctcagtccgga
ccgctgctggtcgtcaccgccaccgggcgggaggccgacgacctgacagccgaactcaag
ggcgtgttcggtgacgaggtcgccatgttcccgtcctgggagacgctgccgcacgagcgg
ctgtcgccgagcgtggaaaccgtcggcgcccggctgatggtgctgcgccggctcgcctgt
ccggacgacgcccgactcggcccgccgctgcgcatcgtcgtcgctgccacccgctcgctg
gtgcagccgatgccgcagcgccccgacgacctgtccgccaccgagccggtgatcctgacc
gtcggcgaggaggccgacttcgacgcggtggtcacccggctcgtcgagctggcctacacc
cgggtggacatggtcggccggcgcggcgagttcgcggtgcgcggcggcatcctcgacgtg
ttcccgccgacggccgagcacccggtgcgcatcgagttctggggtgacgaggtctccgag
atgcggatgttctcggtggccgaccagcgctcgatccccgagatcggcatcgacacgatg
atcgcgttgccgtgccgtgagctgctgctcaccgacgaggtgcgcaagcgggcggtcaag
ctcgccgaggaacaccccaaacgggacaacacgctgcccggcaccgtgccggacatgctg
gccaagctcgccgagggcatcccggtcgacgggatggaggcgctgctgccgctgctgcgg
cccggggaactgtcgctgctggtgcagcacctgccggcgggcaccccggtgctggtgtgc
gacccggagaaggtgcgcacccgcgcggccgacctgatcaagacgggccgcgagttcctc
gaggcgtcctggtcgaccgccgcgatcggcggcgacgccccgatcgatctggaggccctc
ggcgcgtccgggttcctggacctcgaacaggcccacaccgcggcggtcgaagccggtcac
ccgtggtggacgctgagccagctggccagcgagtcggccgtcgagctcgagctcaaaccc
gccccgtcggcgcggtcgcacaccgcgattgacgagatcttcgcgatgctgcgcgcccac
gtcgcgaccggcgggtacgcggccgtggtcaccccgggcaccggcaccgcccagcgtgtg
cgggagcagctggccgaatccgaggtgcccgcagcgcttctcgatcccggtgcggcgccg
aagcccggtgtggtcggggtgctcaaaggtccgctgcacgacggactggtgctgcccggg
gtcaacctggtgatcatcaccgagaccgatctgaccgggcaccgggtgaccgccgtcgag
ggcaagaagctggcggccaagcgacgcaacgtcgtcgacccgctggcgctgaccaagggc
gacctggtggtgcacgaccagcacggcatcggccgcttcctggagatcaccgaacgtgtg
gtcggcggtgcccgccgcgagtacgtggtgctcgagtacgcgtccaaccggcgcggcggc
ggcaccgacaagctctatgtgccgatggactcgctggaccagctgtcccgctatgtcggc
ggcgagaacccggcgctgtcgaggctgggcggcagcgactgggccaacacgaagaacaag
gcacgcaaggccgttcgtgagatcgccgcggagctggtgcagctgtacgccaagcggcag
gcctcgccggggcacgccttcggcccggacaccccgtggcaggccgagatggaggacgcg
ttcgggttcaccgagaccgtcgaccagctgaccgccatccaggaggtcaaggccgacatg
gaaaagccggtcccgatggaccgggtgatctgcggcgacgtcggctacggcaagaccgag
atcgcggtgcgcgcggcgttcaaggccgtccaggacggcaagcaggtcgcggtgctggtg
cccaccacgctgctggccgatcagcacctgcagacgttcaccgagcggatggccggcttc
ccggtgaccatcaaggcgctgtcgcggttcaccccgcccgcggagagccgcgccatcctg
gagggcatgcgcgacggcagcgtcgacatcgtcatcggcacccaccggctgctgcagacc
ggggtgacctggaaggacctcgggctggtgatcgtcgacgaggagcagcgcttcggcgtg
gagcacaaagaacacatcaagtcgatgcgcacccacgtcgacgtgctcaccatgagcgcg
accccgatcccgcgcaccctggagatggcgctggccggcatccgggagatgtcgacgatc
ctcaccccgcccgaggagcgctacccggtgctgacctacgtcggcccgtacgacgagaag
caggtcgccgcggcgctgcgccgcgagctgatgcgcgacgggcaggcgttctatatccac
aaccgggtgcgcaccatcgaccaggccgccgcgcgggtccgtgagctgttgcccgaggcg
cgggtggtggtcgcgcacggccagatgcccgaggagcagctggagaagacggtcgagggc
ttctggaaccgcgagtacgacatcctggtctgcaccacgatcgtcgagaccggcctggac
atctccaacgccaacacgctgatcgtggagcgcgccgataccttcggcctgtcgcagctg
caccagctccggggccgggtgggccgcagccgggagcggggatacgcgtacttcctctat
ccgcccgacgtgccgctcaccgagaccgcctacgaccggctggccaccatcgcccagaac
aacgaactcggcgccggtatggcggtggctatgaaggacctcgagatccgtggtgccgga
aacgttctcggcgtcgagcagtccgggcacgtggccggggtcgggttcgacctgtatgtg
cgactggtgggggaggcggtggaggcctaccgggctgccgccgacggcaagaccgtcacc
acgcccaccgaacccaaggacgtgcgcatcgatctgccggtcgacgcgcacctgccgccg
gactacatcgccagcgaccggctgcggctggaggcctaccggcggttggccgccgccccc
gacgacgccggaatcgacgccgtggtcgaggaactcgtggaccgctacgggccgctgccc
gatccggcggtgcggctggtcgcgacggcgcggctgcggttgctgtgccgccgctacggg
gtgaccgaggtgagcgcgatgtcggcggccacggtgcggatctccccgctggaactggcc
gactcccagcaggtccggctcaagcggttgtacccgggcgcgagctaccgggccaccacc
acgacggtgcaggtgccgatcccgcgggccggggaagggctgggcgcgccgcgcatccgc
gacgaggaactggtgcgcatggtcgccggactgctgctggcgctcgacccggacggcgcg
caggatgtcgacatctcgaagttcggaggtgcagcggtgaccgacgacaagcgggcgtca
cgatga
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