Mycolicibacterium hassiacum: MHAS_03407
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Entry
MHAS_03407 CDS
T05715
Symbol
ligD_1
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mhas
Mycolicibacterium hassiacum
Pathway
mhas03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mhas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MHAS_03407 (ligD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhas03400
]
MHAS_03407 (ligD_1)
Enzymes [BR:
mhas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MHAS_03407 (ligD_1)
DNA repair and recombination proteins [BR:
mhas03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MHAS_03407 (ligD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
VCT91689
LinkDB
All DBs
Position
1:complement(3599591..3601858)
Genome browser
AA seq
755 aa
AA seq
DB search
MKLTNPDKVLYPATGTTKAEVFEYYINIAEAMIPHIAGRPVTRKRWPNGVEQASFFEKQL
ASSAPDWLDRATVAHRSGSTTYPLIDSVEGLAWIAQQAALEVHVPQWRFIGEGARRHPGP
ATRIVFDLDPGEGVSFRLLCRVAREVRDLIADIGLTTYPLTSGSKGLHLYVPLAEPISSR
GASVLARRVAQQLEQIMPNQVTATMTKSLRTGKVFVDWSQNNAAKTTIAPYSLRGREHPT
VAAPRTWEEIDDPKLRHLAFDEVLDRVAELGDLLAELDEKVPIADRLTTYRSMRDAARTP
EPVPIKPPKPGGNNRFVIQEHHARRLHYDLRLERDGVLVSWAVPKNLPDTPSVNHLAVHT
EDHPLEYLTFEGTIPKGEYGAGRMVIWDTGTYEAEKFHDVPPDEPGAGGEVIVTLHGTKI
DGRYALIQTDGKNWLAHRMKDQKNPRAADLAPMLATEGSISRLTAGQWAFEGKWDGYRVL
VDADHGRLEVRSRSGRDVTAEFRQFEALAADLADHHVILDGEAVALDESGVPSFGEMQNR
ARSTRVEFWAFDVLYLDGRSLLRAKYADRRRVLETLAEGGGLIVPDLLPGDTGAEAMEYA
RKKGWEGVIAKRLDSTYQPGRRSKSWLKDKIWNHQEVVIGGWRRGEGGRSSDIGSLLMGI
PVEGGLQFVGRIGTGFTEKELDKLKKLLEPLATDESPFTERLSGVDARGVSYVRPELVGE
VRYSERTSDNRLRQASWRGLRPDKRPDEVVWEQNG
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
gtgaaactcaccaacccggacaaggtgctctatccggcgacgggcaccaccaaggccgag
gtcttcgagtactacatcaacatcgccgaagccatgatcccgcacatcgccggccgtccg
gtgacccgcaaacgctggcccaacggggtggagcaggcgtcgttcttcgagaagcaactc
gcctcgtcggcaccggactggctggaccgggccaccgtggcgcaccgctccggttcgacc
acctatccgctgatcgactcggtcgaagggctggcgtggatcgcgcagcaggccgccctg
gaggtgcacgtcccgcagtggcggttcatcggtgagggcgcccgccgccatccgggtccg
gccacccgcatcgtgttcgatctcgaccccggcgaaggcgtgtcgttccgcctgctgtgc
cgggtggcgcgcgaggtgcgggacctgatcgccgacatcgggctgaccacctatccgctc
accagcggcagcaagggcctgcacctgtatgtgccgctggcggagccgatcagctcgcgc
ggcgcgtcggtgctcgcgcgccgggtggcccagcagctcgaacagatcatgcccaaccag
gtcaccgcgacgatgaccaagagcctgcggacgggcaaggtgttcgtcgactggagccag
aacaacgccgccaagaccacgatcgcgccgtactccctgcgcgggcgggaacaccccacc
gtggccgcgccgcgcacctgggaggagatcgacgacccgaaactgcggcacctggccttc
gacgaggtgctcgaccgggtggccgaactcggcgacctgctggccgaactcgacgagaag
gtgccgatcgccgaccggctcaccacctaccgcagcatgcgggatgcggcgagaacccct
gagccggtgccgatcaagccgccgaagccgggtggcaacaaccggttcgtgatccaggaa
catcatgcccgccggctgcactacgacctgcggctcgaacgcgacggggtgctggtcagc
tgggcggtgccgaagaacctgcccgacaccccgtcggtgaaccatctcgcggtgcacacc
gaagaccacccgctggagtacctcaccttcgagggcaccatcccgaaaggcgagtacggt
gcgggcaggatggtcatctgggacaccggtacctacgaggccgagaagttccacgacgtt
ccacccgacgaaccgggagcgggcggcgaggtgatcgtcaccctgcacggcaccaagatc
gacggccggtacgcgctgatccagaccgacggcaagaactggctggcgcaccggatgaag
gaccagaagaacccccgcgcggccgatctcgcgccgatgctcgcgaccgaggggtcgatc
tcccggctgaccgccggccagtgggcgttcgagggcaaatgggacggctaccgggtgctt
gtcgacgccgaccacggccggctcgaagtgcgttcccgcagcggccgcgacgtcaccgct
gagttccgccaattcgaagcgctggcagcagatctcgccgaccatcacgtcatcctcgac
ggggaggcggtggcgctcgacgagagcggggtgccgagtttcggcgagatgcagaaccgg
gcccgctccacccgcgtcgagttctgggccttcgacgtgctctacctcgacggccgatcg
ttgttgcgggccaagtacgccgaccgccgccgggtgctcgagacgctggccgagggcggc
ggcctgatcgtgcccgacctgctgcccggcgacaccggtgcagaggcgatggagtacgcg
cgcaagaagggctgggagggggtgatcgccaaacggctcgactccacctatcagccggga
cgccggtcgaagtcgtggctgaaggacaagatctggaaccaccaggaggtggtgatcggc
ggctggcgccgaggggagggcggccgctccagcgacatcgggtcgctgctcatgggcatt
cccgtcgagggcggactgcagttcgtcggccgcatcggcaccgggttcaccgagaaggaa
ctcgacaagctcaagaaactgctcgagccactggctaccgacgaatcgccgttcaccgag
cggctttccggcgtcgacgcgcgcggcgtaagctacgtccggccggaactggtgggtgag
gtccgctacagcgagcggacatcggacaacaggctgcggcaggcgagctggcggggactg
cgcccggacaaacgtcccgacgaagtggtgtgggagcagaacggatag
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integrated database retrieval system
