Mannheimia haemolytica USDA-ARS-USMARC-184: B824_12390
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Entry
B824_12390 CDS
T03786
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mhat
Mannheimia haemolytica USDA-ARS-USMARC-184
Pathway
mhat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B824_12390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhat03019
]
B824_12390
03009 Ribosome biogenesis [BR:
mhat03009
]
B824_12390
Enzymes [BR:
mhat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B824_12390
Messenger RNA biogenesis [BR:
mhat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B824_12390
Ribosome biogenesis [BR:
mhat03009
]
Prokaryotic type
rRNA helicases
B824_12390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJE08034
LinkDB
All DBs
Position
complement(1109441..1111246)
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AA seq
601 aa
AA seq
DB search
MTTESLTFADLGLPQPILDAVNEMGFVNPSPIQQECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLAQIDPTQRHPQMLVMAPTRELAIQVADACEQFAKNMKGIRVVTVYGGQRYDIQLR
ALKQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADEMLRMGFIDDVETVMAELPET
HQTALFSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNGFRKNDALLRFL
EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLRSGRLDILV
ATDVAARGIDIERISLVINYDIPLEEESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI
ENLIKKPINEVAIPNHEILMEKRREKFKARISKQLEHHDLEKYRELLEDLFTADQDHEEL
AAAMMMLLQEKQKLILPPDPVVRAARSERGRDRNERNDRRNGREHRENNGVAMDLYRIEL
GREDGVEVRHIVGAIANEGDISSRYIGHIKLYDKYSTIELPQGMPNHLVQHFAHKARVLS
KPMQMTLLGSNSASNANPFEGRGRRGNDRNDRGGRRDGGFNKDRKGGFKEKRFSEKRGRR
D
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgacaactgaatctttaactttcgccgatttaggcttacctcaaccaatccttgatgct
gtaaatgaaatgggctttgtaaacccatcacccattcaacaagaatgtattcctcattta
ttagccggtcgtgatgtgcttggtatggcacaaaccgggagcggtaaaaccgccgcattc
tcgctgccgctgttggcacaaattgacccaacacaacgccacccgcaaatgttggtgatg
gcacccacccgtgagcttgcgattcaagtagccgatgcttgtgagcagtttgcaaaaaat
atgaaaggcattcgtgtagtgacggtttatggtggacaacgttacgacattcaattacgt
gctttaaaacaaggctcacaagtagtagtgggtacacctgggcgtattcttgaccatatc
cgccgtggcacattagatttatccgaattaaaattcatcgtgttagatgaagccgatgaa
atgctgcgtatgggctttattgacgatgttgaaacggtaatggctgaattaccggaaaca
catcaaactgctctcttctctgccaccatgccggagccgattcgccgtattacccgtcgt
tttatgaaagatccgcaagaggtaaaaattaaggcaaccgagcgttcagccccggatatt
gaacaaagctactggctggtaaacggcttccgtaaaaacgatgcgttattgcgtttctta
gaagtagaagaatttgatgctgctatcatctttacccgcaccaaaaccggtactattgat
attaccgaattgtgtgaacgcaacggctaccgtactgcggcattaaacggcgatatgacc
cagcaagcccgtgagcaaaccttagataaattacgctccggtcgtttagatattttagtc
gccaccgatgttgctgcccgtggtattgatattgagcgaatcagcttggttattaactac
gatattccgttagaagaagaatcttatgttcaccgcatcggacgtaccggtcgtgccggt
cgttcaggtcgtgccttactgtttgttgagcctcgtgaacgccgcttattacgcaatatc
gaaaatttaatcaaaaaaccaattaatgaagtggcgattccaaaccacgaaattttaatg
gaaaaacgccgtgagaaattcaaagcccgcatttctaagcagttagaacatcacgattta
gaaaaatatcgtgaattgttggaagatttatttactgcggatcaagaccacgaagaatta
gcagcggcgatgatgatgttactgcaagaaaaacaaaaactgattctgccaccggatccg
gttgtgcgtgctgcccgttctgaacgtggacgtgaccgcaatgagcgaaacgatcgtcgt
aacggtcgtgaacaccgcgaaaacaatggtgtggcaatggatttataccgcattgaattg
gggcgtgaagacggtgtggaagttcgtcatattgttggagcgattgccaacgagggggat
atcagcagccgttacatcgggcatatcaaactttatgataaatactcaaccattgagttg
ccgcaaggaatgccaaatcatctcgtacaacatttcgctcacaaagcacgtgtattaagc
aaaccaatgcagatgacattacttggctcaaacagtgcaagtaatgcaaatccatttgaa
ggtcgtggtcgccgtggtaacgatcgtaatgatcgtggtggtcgccgagacggtggtttc
aataaagaccgcaaaggtggctttaaagaaaaacgtttcagtgaaaaacgtggtcgtcgt
gactaa
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