Micromonospora halotolerans: RMN56_01125
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Entry
RMN56_01125 CDS
T09415
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
mhaw
Micromonospora halotolerans
Brite
KEGG Orthology (KO) [BR:
mhaw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhaw03019
]
RMN56_01125 (hrpB)
Enzymes [BR:
mhaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RMN56_01125 (hrpB)
Messenger RNA biogenesis [BR:
mhaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RMN56_01125 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_30
RoxA-like_Cyt-c
AAA_19
ResIII
AAA_22
AAA
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
WNM39989
LinkDB
All DBs
Position
227173..229776
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AA seq
867 aa
AA seq
DB search
MLSDVSLDLPVRPVLAALVEALDAAGAAVLVAPPGTGKTTLAPLAVADEVPGRVVIAQPR
RVAARAAAHRMAAVLGERVGDRIGYAVRGERRVGPRTRVEVVTTGLLVRRLHHDPELPGV
DAVLLDECHERQLDADLALAFTVEARGTLRPDLRLLAMSATPRADRFAALLGGAAPAPVI
RAEAALHPVERIWTPPSRPVAAPGAGRVDPALLDHVAATVRRALRERAGDVLVFLPGAGE
IAAVAGRLADLRDAVAVLPLHGRLPGAAQDAALAPLPGRRRVVLATAVAESSLTVPGVRV
VVDAGLSRVARTDLARGLGALVTVPVSRAAATQRAGRAGREAPGAVYRCWSEATHARLAP
QPEPEIASADLTGFALELAAWGTPDGAGLALPDPPPPAALAVARDTLTTLGAVDGDGRIT
ARGRAIAAAGAHPRLARALLDGAERVGADRAAEVVALLAEETLGGAGDDLTALWRRLRTG
ADPAATARWRTEVRRLRTALPGGPGSGRSGRDRRPGDRTSGRAAPDLPADRAPGRSGQDR
LPDDLAAGLLVGLAYPERLARVRRAGGSAYLMAGGTAAELAAGSGLAGSAWLAIAVADRS
PGAPTARVRLATPVDEATAREAGGPLLRADREVGWSGGDVVAREVVRLGAIELVDRPLAA
PEPARLTEAVLAGLRQDGLTLLTWTPEATALRRRLAFCRQALGDDWPDVSDAALLAAAPA
WLGPELSRARRRADLARIDVAAALRRLLDWRQAARLDEVAPERLPVPSGSRIRLDYADPA
APVLAVKLQETFGWAAAPRIADGRVPVLLHLLSPAGRPVAVTADLASFWRTGYPQVRAEL
RGRYPRHPWPDDPTSAEPTRRASPRRR
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
gtgctctccgacgtctccctggacctgccggtccggccggtcctggcggcgctggtcgag
gcgctggacgcggccggcgcggcggtcctggtggcgcctcccggcaccggcaagaccacc
ctggcgccgctcgcggtggccgacgaggttcccggccgggtggtgatcgcccagccccgc
cgggtggccgcccgggccgccgcgcaccggatggccgccgtgctcggcgagcgggtcggc
gaccggatcgggtacgcggtgcgcggcgagcgccgggtcggtccgcggacccgggtcgag
gtggtcaccaccggcctgctggtccgccggctgcaccacgacccggagctgcccggcgtc
gacgccgtgctgctcgacgagtgccacgagcggcagctcgacgccgacctggcgctggcg
ttcacagtggaggcccgtggcacgctccggcccgacctgcggctgctggccatgtcggcc
accccgcgggcggaccggttcgccgcgctgctcggcggggccgctcccgcgccggtgatc
cgggccgaggccgccctgcacccggtggagcggatctggacgccaccgtcccgcccggtc
gccgcccccggcgcgggccgggtcgacccggcgctgctggaccacgtggcggcgacggtg
cgccgcgcgctgcgcgagcgggccggggacgtgctggtcttcctgcccggtgccggcgag
attgccgccgtcgcgggccgcctggccgacctgcgggacgcggtcgccgtgctgcccctg
cacggccggctccccggcgccgcgcaggacgccgcgctcgcgccgctgcccggtcggcgc
cgggtggtgctggccaccgccgtggcggagagcagcctgaccgtgcccggggtccgcgtc
gtggtggacgccgggctgagccgggtggcccgcaccgacctggcccgtgggctgggcgcc
ctggtcaccgtgccggtgtcccgggcggccgccacccagcgggccggccgggccgggcgg
gaggcgccgggtgcggtctaccggtgctggtcggaggcgacccacgcccggctggctccg
cagcccgagccggagatcgcctccgccgacctgaccgggttcgcgctggagctggccgcc
tggggcaccccggacggtgccggcctggcgctgcccgatcccccgccgcccgccgcgctg
gcggtcgcccgggacacgctgaccacgctcggcgcggtcgacggggacggccggatcacc
gcgcgcgggcgggccatcgcggccgccggagcccatccccggctggcccgcgcgctgctc
gacggcgcggagcgggtcggcgccgaccgggccgccgaggtggtggcactgctcgccgag
gagacactcggcggcgccggggacgacctcacggcgctgtggcgccggctgcgcaccggc
gccgacccggcggcgaccgcccgctggcggaccgaggtacgccgcctgcgcaccgccctg
cccggcggtccgggctccgggcgctccgggcgggaccgccggcccggcgaccggacctcc
gggcgcgccgcacccgacctgcccgccgaccgggctccggggcgctccggacaggaccgc
ctgcccgatgacctggccgcggggctgctggtggggctggcgtacccggagcggttggcg
cgggtgcggcgggccggcgggtccgcgtacctgatggccggcgggaccgccgcggagctg
gccgccgggtcggggctggcgggctcggcgtggctggcgatcgcggtggccgaccgctcc
cccggcgcgccgaccgcccgggtccggctggccaccccggtcgacgaggcgaccgcccgg
gaggccggcgggccgctgctgcgggccgaccgcgaggtcggctggtccggcggggacgtg
gtggcgcgggaggtggtccggctcggcgcgatcgagctggtcgaccggcccctcgccgcg
cccgagccggcgcggctcaccgaggcggtgctcgccgggctgcgccaggacggcctgacc
ctgctcacctggacgcccgaggccacggccctgcgccggcggctggccttctgccggcag
gcgctcggcgacgactggccggacgtctccgacgccgcgctgctcgccgccgcaccggcc
tggctgggcccggagctgtcccgcgcccgccgccgggccgacctggcccggatcgacgtg
gcagcggcgctgcgccggctgctggactggcggcaggcggcccggctggacgaggtggca
cccgagcggctcccggtgccgagcggttcgcggatccggctggactacgccgacccggcc
gccccggtgctggcggtgaagctccaggagacgttcggctgggcggccgcgccccggatc
gccgacggccgggtgccggtgctgctgcacctgctctcccccgccggccggccggtggcg
gtcaccgccgacctggcctcgttctggcggaccggctacccgcaggtgcgggcggagctg
cgcgggcgctatccccgccacccgtggccggacgacccgaccagcgccgagcccacccgc
cgcgccagcccccgccggcgctga
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