Micromonospora halotolerans: RMN56_01375
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Entry
RMN56_01375 CDS
T09415
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mhaw
Micromonospora halotolerans
Brite
KEGG Orthology (KO) [BR:
mhaw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhaw03019
]
RMN56_01375 (hrpA)
Enzymes [BR:
mhaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RMN56_01375 (hrpA)
Messenger RNA biogenesis [BR:
mhaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RMN56_01375 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
T2SSE
nSTAND_NTPase5
nSTAND3
NACHT
SLFN-g3_helicase
PhoH
AAA_16
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WNM40038
UniProt:
A0ABY9ZXR5
LinkDB
All DBs
Position
278185..282180
Genome browser
AA seq
1331 aa
AA seq
DB search
MQNPAAPAVPETARDLHRRLPALMFRDQRRLQRRLDGVRKLRDPQRRESALAEIAADVAR
AEARLTARRAAVPTITYPAQLPVSERKDDIAAAIRDHQVVIVAGETGSGKTTQLPKICLE
LGRGVTGLIGHTQPRRLAARTVADRIAEELGTELGDVVGYKVRFTDQVGDNSLVKLMTDG
ILLAELQTDRMLRQYDTLIIDEAHERSLNIDFILGYLRQLLPRRPDLKVVITSATIETDR
FAKHFADAEGNPAPVVEVSGRTYPVEVRYRPLVEVVEGEEEDDGDEENVRDQIQAIGDAV
EELAAEGPGDILVFLSGEREIRDTADALGKLVQKKRSLLGTEILPLYARLSTAEQHRVFA
PHAGRRVVLATNVAETSLTVPGIKYVVDPGTARISRYSSRLKVQRLPIEPVSQASANQRK
GRCGRTSDGICIRLYDESDLTSRPEFTDPEILRTNLASVILQMTSIGLGDIAAFPFIDPP
DRRNVTDGVNLLHELGALDPAETDPAKRLTPLGRRLAQLPVDPRLARMVLEGERNGCATE
VVVIAAALSIQDPRERPADKQAQADQAHARFADKESDFVAYLNLWRYLREQQRALSSSAF
RRMCKAEYLNYLRVREWQDIVSQLRQVLRTSDKGDGRRGAGADLPEEIDTPKVHQSLLPG
LLSHLGLKDAQKHEYLGARGAKFAIFPGSALFKKPPRWVMAAELVETSRLWGRVAGRVEP
EWVEPLAQHLVKRSYSEPHWEKKQAAVMAYEKVTLYGIPLVTSRKVNFGRIDPVLSRELF
LRHALVEGDWQTHHQFWADNQRLLAEVEELENRARRRDILVDDETIYHFYDQRIPADVVS
GRHFDTWWKKTRREQPDLLTFTRELLVNSGRGGVDESDYPDEWRADGVALPLTYTFDPGT
PTDGVTVDIPLPLLNQVPAESFDWQVPGLREELVIALIRSLPKAIRRNFVPVPDYARAAL
AAITPGEEPLLAGLTRQLRRMTGVTVPPDAWDPGRLPPHLRVTFRVLGEDDKPVAEGKDL
PALQRELRQEVRQLVAAAAPDVARTGLTEWSIGTLPRTIEQVRAGYAVTAYPALVDEGTT
VGVKVFDSPAEQEAAHWAGTRRLLRLTVPSPAKFLQGRLSNEAKLALSRNPHGGVPALIE
DAAGAAIDKLMADAGGPAWEAEGFAALRERVRADLVDTVVEVMGRVRQVLAAAYAVEQRL
GATRNLAVVAALADIRNQLGGLVHKGFITEAGYARLPDLLRYLTAIERRLDRLAGNPQRD
KQQQDRIAVVQKEYQDLLAALPPSKRQSAAVRQIRWMIEELRVNVFAQALGTPYPVSEQR
IYRAMDDAEGR
NT seq
3996 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatccagccgcacccgccgtacccgagaccgcccgcgacctgcaccgccgcctc
cccgccctgatgttccgcgaccagcgccggctccagcggcggctcgacggggtgcggaag
ctgcgcgacccgcagcggcgggaatcggcgctggccgagatcgcggccgacgtggcccgg
gccgaggcgcggctgaccgcccggcgggccgccgtgccgacgatcacctatccggcgcag
ctgccggtcagcgagcgcaaggacgacatcgccgccgccatccgcgaccaccaggtggtg
atcgtggccggcgagacgggctccggcaagaccacccagctgcccaagatctgcctggag
ctgggccgcggcgtcaccgggctgatcggccacacccagccgcgccggctcgccgcccgg
accgtggcggaccggatcgccgaggagctcggcaccgagctgggcgacgtggtcggctac
aaggtgcgcttcaccgaccaggtcggcgacaacagcctggtcaagctcatgaccgacggc
atcctgctggccgagttgcagaccgaccggatgctgcgccagtacgacacgttgatcatc
gacgaggcgcacgagcgcagcctcaacatcgacttcatcctcggctacctccgccagctg
ctgccccgccgccccgacctcaaggtggtcatcacctcggcgaccatcgagaccgaccgg
ttcgcgaagcacttcgccgacgccgagggcaaccccgcgccggtcgtcgaggtgtccggc
cggacctacccggtggaggtgcgctaccgcccgctggtcgaggtcgtcgagggcgaggag
gaggacgacggggacgaggagaacgtccgggaccagatccaggccatcggcgacgcggtc
gaggaactggccgccgaggggcccggcgacatcctggtcttcctcagcggcgagcgggag
atccgggacaccgccgacgcgctcggcaagctggtgcagaagaagcgctcgctgctcggc
accgagatcctccccctctacgcccggctctccacggccgagcagcaccgggtcttcgcc
ccgcacgccgggcgccgggtggtgctcgccaccaacgtcgcggagacctcgctgaccgtc
cccggcatcaagtacgtggtggaccccggcacggcccggatctcccgctactccagccgg
ctcaaggtgcagcggctgcccatcgagccggtctcccaggcctcggccaaccagcgcaag
gggcgctgcgggcgcacctcggacggcatctgcatccgcctctacgacgagtcggacctc
acctcccggcccgagttcaccgacccggagatcctgcgcaccaacctggcctcggtcatc
ctccagatgacctccatcgggctgggcgacatcgccgccttcccgttcatcgacccgccg
gaccggcgcaacgtcaccgacggcgtgaacctgctgcacgagctgggcgcgctggacccg
gccgagaccgacccggcgaagcggctcaccccgctgggccggcggctggcccagctcccg
gtcgacccgcggctggcccggatggtcctggagggcgagcgcaacggctgcgccaccgag
gtcgtcgtgatcgcggcggcgctgtccatccaggacccgcgcgagcggcccgccgacaag
caggcccaggccgaccaggcgcacgcccggttcgccgacaaggagtcggacttcgtcgcg
tacctgaacctgtggcgctacctgcgcgagcagcagcgggccctgtcctccagcgcgttc
cggcggatgtgcaaggcggaatacctgaactacctgcgggtgcgcgaatggcaggacatc
gtcagccagctgcgccaggttctgcgtacctcggacaagggtgacggccggcgcggggcc
ggcgcggacctgcccgaggagatcgacaccccgaaggtgcaccagtcgctgctgcccggc
ctgctctcccacctcgggctcaaggacgcgcagaagcacgagtacctgggggcgcgcggg
gcgaagttcgcgatcttccccggctcggcgctgttcaagaagccgccgcgctgggtgatg
gccgccgagctggtcgagacctcccggctctggggccgggtggccggccgggtcgagccg
gagtgggtcgagccgctcgcccagcacctcgtgaagcgcagctacagcgagccgcactgg
gagaagaagcaggccgccgtgatggcctacgagaaggtcaccctctacggcatcccgctg
gtcacctcccgcaaggtcaacttcggccggatcgacccggtgctgagccgggagctgttc
ctccggcacgccctcgtggagggcgactggcagacccaccaccagttctgggcggacaac
cagcggctgctggccgaggtggaggagctggagaaccgggcccgccgccgggacatcctg
gtcgacgacgagaccatctaccacttctacgaccagcggatccccgccgacgtggtgtcc
ggccggcacttcgacacctggtggaagaagacccgccgggagcagccggacctgctcacc
ttcacccgcgagctgctggtcaactccgggcggggcggggtggacgagtccgactacccg
gacgagtggcgggccgacggggtcgccctgccgctgacgtacaccttcgacccgggcacc
cccaccgacggcgtcaccgtggacatcccgctgccgctgctcaaccaggtgccggcggag
agcttcgactggcaggtgcccggcctgcgcgaggaactcgtcatcgcgctgatccggtcg
ctgcccaaggcgatccggcgcaacttcgtcccggtgcccgactacgcccgggcggccctc
gccgcgatcacgcccggcgaggagccgctgctcgccgggctcacccggcagctgcgccgg
atgaccggggtgaccgtcccgccggacgcctgggacccgggcaggctgccgccgcacctg
cgggtcaccttccgggtgctcggcgaggacgacaagccggtcgccgagggcaaggacctg
ccggccctgcaacgcgagctgcgccaggaggtacgccagctcgtcgccgccgccgcgccg
gacgtggcccgcaccggcctgacggagtggtccatcggcaccctgccgcgcaccatcgag
caggtccgcgcgggctacgcggtgaccgcgtacccggccctggtcgacgagggcacgacg
gtcggggtgaaggtgttcgactcccccgccgagcaggaggccgcgcactgggccggcacc
cggcggctgctccgcctgaccgtgccctccccggcgaagttcctgcaggggcggctgagc
aacgaggccaagctggcgctgtcccgcaacccgcacggcggggtgccggcgctgatcgag
gacgcggccggcgcggccatcgacaagctgatggccgacgcgggcggcccggcctgggag
gccgagggcttcgccgccctgcgggagcgggtccgcgccgacctggtcgacacggtggtc
gaggtgatgggccgggtccggcaggtgctggccgccgcgtacgcggtggagcagcgactg
ggcgccacccggaacctggccgtcgtggccgcgctggccgacatccgcaaccagctcggc
ggcctcgtgcacaagggcttcatcaccgaggccgggtacgcccgcctgcccgacctgctg
cgctacctgaccgcgatcgagcgccggctggaccggctggccggcaacccgcagcgggac
aaacagcagcaggaccggatcgccgtggtgcagaaggagtaccaggacctgctcgccgcg
ctgcccccgtcgaagcggcagtccgccgcggtccggcagatccgctggatgatcgaggag
ctgcgggtgaacgtcttcgcccaggcgctcggcaccccgtacccggtctccgagcagcgc
atctaccgcgccatggacgacgccgagggccgctag
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