Micromonospora halotolerans: RMN56_07255
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Entry
RMN56_07255 CDS
T09415
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mhaw
Micromonospora halotolerans
Pathway
mhaw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mhaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RMN56_07255 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhaw03400
]
RMN56_07255 (mfd)
Enzymes [BR:
mhaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RMN56_07255 (mfd)
DNA repair and recombination proteins [BR:
mhaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RMN56_07255 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
SCO3859_C
RecG_dom3_C
UB2H
DUF8411
Motif
Other DBs
NCBI-ProteinID:
WNM41140
UniProt:
A0ABZ0A1P4
LinkDB
All DBs
Position
complement(1576937..1580593)
Genome browser
AA seq
1218 aa
AA seq
DB search
MLTGLFSAALADPGLARARDLARSGAAQVDGLDLTAPAALRPFAVAAVAADEPAGGAGRP
VLAVTATTREADDLASALGSLLPPEQVAVFPSWETLPHERLSPRSDTVGRRLAVLRRLAH
PGSADAHGRTGPLRVVVAPVRSLLQPQLKGLGDLEPVQLAAGDEADLEEVARRLIDMAYA
RVDLVTKRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRTIEGVPQLWA
PPCRELLLTPDVRERAAALAQEHPELAEILDKLAEGIPVEGMESLVPALLGNDSLELLVE
TMPAGTHVLLCDPERIRTRAHDLVRTSEEFLQASWAAAAVGGQAPVDLGAAAFRTLADVR
TAARALRQPWWTLAPFGLVEAEAAPARQPWEDEPTEVDVTPDDAIAVTLAAQPAPLYHGE
TARVVDDLKRWAGEGWSIALVFEGHGPAQRAVEVLRDAGLGARLTEEVPAAPTPGDVLVS
CGCLTAGFVDEASRFVLLTGNDVTGGRGTSTRDMRRMPSRRRNTIDPLELKAGDHVVHEQ
HGIGRYVELVQRTVNGASREYLVIEYAPSKRGQPGDRLFVPTDQLDQLSRYVGGEQPTLH
KMGGSDWQKSKARARKAVREIAAQLIQLYAARKASKGHSFGPDTPWQRELEDAFPWQETP
DQLAAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQ
QHYNTFAERMSQFPITIRQLSRFQTPKESERTLEMVADGTVDIVIGTHRLLQAATRFKSL
GLVIIDEEQRFGVEHKEHLKTLRASVDVLAMSATPIPRTLEMAITGIREMSTIATPPEER
HPVLTFVGAYDDRQVAASIHRELLRDGQVFYLHNRVESIDRAARRIRELVPEARVAVAHG
QMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQIRGRV
GRGRERAYAYFLYPSDKPLTENAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQ
SGHIEGVGFDLYVRMVGEAVSAFKGEHAEEETEVKVDLPIDAHLPQDYVSVERLRLEMYR
KLAEARDEERLREVVAEMTDRYGEPPTPVQNLVAVARFRLLARRYGLTDVSMQGKHIRFG
PLPLPDSKQLRLKRYHPDSVYKQALDQVSVPRPSTRRVGGEPLRDQALLEWCAQLLSDVL
GEPAELAGTASAALASGR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccggactcttctccgccgccctggccgacccggggctggcccgggcgcgtgac
ctggcgcgctccggtgccgcccaggtcgacggcctcgacctgaccgcccccgccgcgttg
cggccgttcgccgtcgccgccgtcgcggccgacgagccggccggcggcgcgggccgtccc
gtgctggccgtgacggccaccacccgcgaggccgacgatctggcctccgcgctgggcagc
ctgctgcccccggagcaggtggcggtcttcccctcctgggagacgctgccgcacgagcgg
ctctcgccccgctccgacaccgtcgggcggcggctggccgtgctgcgccggctggcccac
cccggctcggccgacgcgcacgggcgcaccggcccgctgcgggtggtcgtggcgcccgtc
cgctccctgctccagccgcagctcaaggggctcggcgacttggagcccgtgcagctcgcc
gccggcgacgaggcggatctggaggaggtcgcccgccggctcatcgacatggcctacgcc
cgggtcgacctggtcaccaagcgcggtgagttcgccgtgcgcggcggcatcctggacgtc
ttcccgcccaccgacgagcacccgtcccgggtcgagttctggggcgacgaggtcgaggag
atccgcaccttcgccgtcgccgaccagcgcaccatcgagggcgtcccgcagctctgggcg
ccgccctgccgcgaactgctcctcacccccgacgtgcgggagcgggccgccgcgctcgcg
caggagcacccggagctggccgagatcctcgacaagctggccgagggcatcccggtcgag
gggatggagtcgctggtgccggcgctgctcggaaacgacagcctggagctcctggtggag
accatgccggccggcacccacgtgctgctctgcgacccggagcggatccgcacccgggcc
cacgacctggtgcgtacctccgaggagttcctccaggcgagctgggccgcggccgcggtc
ggcggccaggccccggtcgacctcggcgccgccgccttccggaccctggccgacgtgcgc
acggcggcccgcgccctgcgccagccctggtggaccctcgcgccgttcggcctcgtcgag
gccgaggccgcgcccgcccggcagccgtgggaggacgagccgaccgaggtcgacgtgacc
cccgacgacgccatcgcggtgaccctggccgcccagcccgccccgctctaccacggcgag
accgcccgggtggtcgacgacctcaagcgctgggccggcgagggctggtcgatcgcgctc
gtcttcgagggccacggccccgcccagcgggccgtcgaggtgctccgcgacgccggcctc
ggcgcccggctcaccgaggaggtgccggccgcgcccacccccggcgacgtgctggtctcc
tgcggctgcctgaccgccggcttcgtcgacgaggcgtcccggttcgtgctgctcaccggc
aacgacgtcaccggcggccggggcacctccacccgcgacatgcgcaggatgccgagccgg
cggcgcaacaccatcgacccgctggagctcaaggccggcgaccacgtggtgcacgaacag
cacggcatcggccgctacgtcgagctggtccagcggaccgtcaatggcgcgagccgggaa
tacctggtcatcgagtacgcgccgagcaagcgcggccagcccggcgaccgcctcttcgtc
cccaccgaccagctcgaccagctctcccgctacgtcggcggcgagcagcccacgctgcac
aagatgggcggctcggactggcagaagtccaaggcccgggcccgcaaggcggtccgcgag
atcgccgcgcagctgatccagctctacgccgcccgcaaggcgtccaaggggcactcgttc
ggcccggacaccccctggcagcgggagctggaggacgccttcccctggcaggagacgccc
gaccagctggccgccatcgaggaggtcaagcgggacatggagcagaccgtcccgatggac
cggctgatctgcggcgacgtcggctacggcaagaccgagatcgcggtccgggcggcgttc
aaggccgtgcaggacggcaagcaggtcgccgtgctggtgcccaccaccctgctggtgcag
cagcactacaacaccttcgccgagcggatgagccagttcccgatcaccatccggcagctc
tcccggttccagaccccgaaggagagcgagcggacgctggagatggtcgccgacggcacc
gtcgacatcgtcatcggcacccaccggctgctccaggcggccacccggttcaagtctctc
gggctggtcatcatcgacgaggagcagcgcttcggcgtcgagcacaaggagcacctgaag
acgctgcgcgcctcggtcgacgtgctggccatgtcggccaccccgatcccgcgcaccctg
gagatggcgatcaccggcattcgggagatgtccacgatcgccaccccgccggaggagcgg
cacccggtgctcaccttcgtcggggcgtacgacgaccggcaggtggccgcctcgatccac
cgggaactgctccgcgacgggcaggtcttctacctgcacaaccgggtcgagtcgatcgac
cgggcggcccgccggatccgcgagctggtacccgaggcccgggtcgcggtggcgcacggc
cagatgggcgaggaagcgctcgagaaggtgatggtcggcttctgggagaaggagttcgac
gtcctggtctgcaccacgatcgtggagtccggcatcgacatcccgaacgccaacaccctc
atcgtcgagcgggccgacctgctcggcctggcccagctgcaccagatccgcggccgggtg
ggccgaggccgggagcgggcgtacgcgtacttcctctacccgtccgacaagccgctcacc
gagaacgcgcacgagcggctggccaccatcgcccagcacaccgagctgggcgccggcatg
tacgtggccatgaaggacctggagatccggggcgccggcaacctgctcggcggcgagcag
tccggccacatcgagggggtcggcttcgacctctacgtccggatggtcggcgaggcggtc
tccgcgttcaagggtgagcacgcggaggaggagaccgaggtcaaggtcgacctgccgatc
gacgcccacctgccgcaggactacgtgagtgtggagcggctgcgcctggagatgtaccgc
aagctggccgaggcccgcgacgaggagcggctacgcgaggtggtcgccgagatgaccgac
cgctacggcgagccgcccacgccggtgcagaacctggtcgcggtggcccggttccggctg
ctggcccggcggtacggcctcaccgacgtgtcgatgcagggcaagcacatccggttcggg
ccgctgccgctgcccgactcgaagcagctgcggctcaagcgctaccacccggactcggtc
tacaagcaggccctcgaccaggtcagcgtgccccggccgagcacccgccgggtcggcggc
gagccgctgcgcgaccaggcgctgctggagtggtgcgcccagctcctctccgatgtcctc
ggcgagcccgcggagctggccggtactgccagcgccgcattggcgagcggacggtga
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integrated database retrieval system
