Micromonospora halotolerans: RMN56_15210
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Entry
RMN56_15210 CDS
T09415
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mhaw
Micromonospora halotolerans
Pathway
mhaw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mhaw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RMN56_15210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhaw03021
]
RMN56_15210
03400 DNA repair and recombination proteins [BR:
mhaw03400
]
RMN56_15210
Enzymes [BR:
mhaw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RMN56_15210
Transcription machinery [BR:
mhaw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RMN56_15210
DNA repair and recombination proteins [BR:
mhaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RMN56_15210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WNM42598
LinkDB
All DBs
Position
3187724..3191611
Genome browser
AA seq
1295 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPQRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFASYVVTSVDAEARHRDLSTIENEILAEKRQAENSRDSEIEKRAAKLEAD
LAELEAEGAKADVRRKVKEGGEREMRQIRDRAQREIDRLDEVLDTFRKLEPKQLVTDELL
YRELRDRFGEYFTGSMGAEAIKALVQNMDLEAEAESLRETIRSGKGQRKIRALKRLKVVA
AFQNTRNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPKLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PVVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHVPLSAEAQAEARILMLSSNNILKPADGKPVTMPTQDMVIGLYHLTHLTPGGQGEGR
AFSSDAEARMAYDNGELHLQTPVKIRLRGIVGVDNGAGAEPWVAPEGWVEGEPVTVETTL
GRVLFNETLPQGYRFVNYEIRKGQLSAIVNDLAERFPKVALAATLDGLKEAGFHWATWSG
VTIGMEDVIAPPRKREILDKYEKEADRIDKQYQRGLMTAEERRGELIEIWTKATNEVAKE
MDTALPQENPLWKMINSGARGNLLQLRQIAAIRGLVANPKGEIIPRPIKASYREGLSVLE
YFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRAIPMQIGERLDGK
LVVHEHAETSVHARTLADDIKGPDGTVVAHRGQDLNSILVDAIVAAGVETVRVRSVLTCE
SKLGVCGACYGRSLPTGKTVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGL
PRVQEIFEARVPKGKAPIADTPGRIRIEDGERSRKIVVIPDDGSDEIVYDKISKRVRLRA
HDGDHVEVGEKLTEGTIDPHELLRILGPRAVQVHLTQEVQEVYRSQGVLIHDKHIEIIIR
QMLKRVTVIDSGSTEFLPGVLVDRALFESENRRLVGEGGEPAAGRPVLMGITKASLATDS
WLSAASFQETTRVLTDAAINSRSDSLVGLKENVIIGKLIPAGTGISKYRNVRVEPTEEAK
AKVYSMTGYPETDYGFGPASGQAVPLDDFDFGSYR
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcgcattggcctcgccaccgccgacgacatc
cgtcagtggtcccacggcgaggtcaagaagcccgagaccatcaactaccgcaccctgaag
ccggaaaaggacgggctcttctgcgagaagatcttcggtccgcagcgggactgggagtgc
tactgcggtaagtacaagcgggttcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgctccaaggtccgccgggagcggatgggtcacatcgagctggccgctccg
gtgacccacatctggtacttcaagggcgtgccgagccggctgggctacctgttggacctc
gccccgaaggacctcgaaaagatcatctacttcgcctcgtacgtcgtgacgagcgtggac
gccgaagcgcgtcaccgtgacctctcgaccatcgagaacgagatcctggccgagaagcgg
caggccgagaacagccgcgactcggagatcgagaagcgggccgccaagctcgaggccgac
ctggccgagctggaggccgagggcgcgaaggcggacgtccggcgcaaggtcaaggagggc
ggagagcgcgagatgcgccagatccgcgaccgggcccagcgcgagatcgaccgcctcgac
gaggtcctcgacaccttccgcaagctcgagccgaagcagctggtcaccgacgagctgctc
taccgcgagctgcgcgaccgcttcggcgagtacttcaccggcagcatgggcgccgaggcc
atcaaggcgctggtccagaacatggacctggaggccgaggccgagagcctgcgcgagacc
atccgctccggcaagggccagcggaagatccgggcgctcaagcggctcaaggtcgtcgcg
gcgttccagaacacccgcaactcgccgctcggcatggtgctggactgcgtcccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccggaacaaccgcctcaagcggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgtcgtggccggccggtcaccggtccgggcaaccgcccgctgaag
tcgctctccgacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactccggccgttcggtcatcgtggtcggcccgaagctcaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtggacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcggcagcgg
ccggtcgtgtgggacgtgctggaagaggtcatcggcgagcacccggtcctgctgaaccgg
gcgccgaccctgcaccggctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctggtctgcaccgcgttcaacgccgacttcgacggtgaccag
atggcggtccacgtgccgctgtccgccgaggcccaggccgaggcgcggatcctgatgctg
tcgtcgaacaacatcctcaagccggccgacggcaagccggtcaccatgcccacccaggac
atggtcatcggcctctaccacctcacccacctcacccccggtgggcagggcgagggtcgg
gcgttcagctcggacgccgaggcgcggatggcgtacgacaacggcgagctgcacctgcag
acgccggtcaagatccgcctgcgcggcatcgtcggggtcgacaacggcgccggcgccgag
ccgtgggtcgcgcccgagggctgggtcgagggcgagccggtgacggtggagaccaccctg
ggccgggtcctgttcaacgagacgctgccgcagggctaccgcttcgtgaactacgagatc
cgcaagggccagctctccgcgatcgtcaacgacctcgccgagcgcttcccgaaggtggcc
ctggcggccaccctggacgggctcaaggaggccggcttccactgggccacctggtccggc
gtcaccatcggcatggaggacgtcatcgctccgccgcgcaagcgggagatcctggacaag
tacgagaaggaagccgaccggatcgacaagcagtaccagcgtggtctgatgaccgccgag
gagcgtcgcggcgagctcatcgagatctggaccaaggcgaccaacgaggtcgccaaggag
atggacaccgcgctgccgcaggagaacccgctgtggaagatgatcaactcgggtgcccgc
ggtaacctgctccagctccggcagatcgcggcgatccgtggtctggtggccaacccgaag
ggtgagatcatcccgcggccgatcaaggcctcgtaccgggagggtctgtccgtgttggag
tacttcatctccacgcacggcgcccggaagggtctcgcggacaccgccctgcgtaccgcc
gactcgggttacctgacccggcgtctggtggacgtctcgcaggacgtcatcatccgcgag
gaggactgcggcaccgaccgcgccatcccgatgcagatcggcgagcggctcgacggcaag
ctggtcgtgcacgagcacgccgagaccagcgtgcacgcgcggaccctggccgacgacatc
aaggggccggacggcaccgtggtggcccaccgcggccaggacctcaactccatcctggtc
gacgcgatcgtcgcggccggggtggagacggtgcgggtgcgcagcgtgctcacctgcgag
tcgaagctgggcgtctgcggtgcgtgctacggccgctcgctgccgaccggcaagaccgtg
gacgtcggcgaggcggtcggcatcatcgccgcccagtcgatcggtgagccgggtacgcag
ctgacgatgcgtaccttccacaccggtggtgtcgcgggtgaggacatcacccagggtctg
ccccgtgtccaggagatcttcgaggcccgggtcccgaagggtaaggcgcccatcgccgac
accccgggtcggatccggatcgaggacggcgagcggtcccgcaagatcgtggtcatcccg
gacgacggcagcgacgagatcgtctacgacaagatctcgaagcgggtccggctccgggcg
cacgacggcgaccacgtcgaggtcggcgagaagctcaccgagggcaccatcgacccgcac
gagctgctgcgcatcctcggcccgcgcgcggtccaggtccacctgacccaggaggtccag
gaggtctaccgctcgcagggtgtgctcatccacgacaagcacatcgagatcatcatccgc
cagatgctcaagcgggtgacggtcatcgactccggctcgaccgagttcctgccgggcgtg
ctggtcgaccgggcgctgttcgagtcggagaaccgccggctcgtcggcgagggtggcgag
cccgccgccggtcgcccggtgctgatgggtatcaccaaggcctcgctggccacggactcc
tggctctcggcggcctccttccaggagaccacccgggtgctgaccgacgcggcgatcaac
tcgcgcagcgactcgctggtcggcctcaaggagaacgtgatcatcggcaagctcatcccg
gccggtacgggcatcagcaagtaccgcaacgtccgggtcgagccgaccgaggaggcgaag
gccaaggtctactcgatgaccggctacccggagaccgactacggcttcgggccggccagc
ggccaggcggtgccgctggacgacttcgacttcgggtcgtaccgctaa
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