Micromonospora halotolerans: RMN56_25010
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Entry
RMN56_25010 CDS
T09415
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mhaw
Micromonospora halotolerans
Brite
KEGG Orthology (KO) [BR:
mhaw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mhaw03016
]
RMN56_25010
Enzymes [BR:
mhaw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RMN56_25010
Transfer RNA biogenesis [BR:
mhaw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RMN56_25010
Prokaryotic type
tRNA splicing ligases
RMN56_25010
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WNM38368
UniProt:
A0ABY9ZSV6
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All DBs
Position
5307926..5309125
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AA seq
399 aa
AA seq
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MGFTPLAGTRAPVRVWTDPYTIEAQAARQLRNIGALPWVQGVAVMPDVHFGKGATVGSVI
AMRQAVSPAAVGVDIGCGMSAVRTSLTAADLPDDLGPLRSAIEAAIPVGFAMRADAVDPR
RVRGLEQGGWDDFWRRFATLDRKVAQLETRAQRQLGTLGGGNHFIEVCLEQGGPDDGRVW
LMLHSGSRNIGKELAERHMAVARGLPHNVDLPDRDLAVFLAGTPEMDAYRRDLFWAQEYA
RRNRAVMLALLCAVVRDEFPQVSYDEPVSCHHNYVAEESYDGVEVLVTRKGAIRAGRGDL
GIIPGSMGTGSYIVRGKGNVDAYCSASHGAGRRMSRGQAKRTYSTADLAAQTAGVECRKD
AGVVDEIPGAYKDITQVMAQQEDLVEVVAHLKQVVCVKG
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcaccccgctggccggtacccgggcgccggtccgggtctggaccgacccgtac
acgatcgaggcgcaggcggcccggcagctgcgcaacatcggcgcgctgccctgggtgcag
ggcgtcgccgtgatgccggacgtgcacttcggcaagggcgccaccgtcgggtcggtcatc
gccatgcggcaggccgtctcgcccgccgcggtcggcgtcgacatcggctgcgggatgtcc
gcggtgcgcacctcgctcaccgcggccgacctgcccgacgacctgggccctctgcgcagc
gccatcgaggcggccatcccggtcggcttcgccatgcgcgccgacgcggtcgacccgcgc
cgcgtccgcggcctggagcagggcggctgggacgacttctggcgccgcttcgccaccctc
gaccggaaggtggcgcagctggagacccgggcccagcgccagctgggcaccctcggtggc
gggaaccacttcatcgaggtctgcctcgagcagggcggcccggacgacggccgggtctgg
ctgatgctgcactccggctcccgcaacatcggcaaggaactcgccgagcggcacatggcg
gtggcccgcgggctgccgcacaacgtcgacctgcccgaccgggacctcgcggtgttcctc
gccggcaccccggaaatggacgcctaccgccgggacctcttctgggcccaggagtacgcg
cgccgcaaccgggccgtcatgctcgccctgctctgcgcggtggtccgggatgagttcccg
caggtcagctacgacgagccggtctcctgccaccacaactacgtggcggaggagagctac
gacggggtcgaggtgctggtgacccgcaagggcgcgatccgggccggccggggcgacctg
ggcatcatcccggggtcgatgggcaccgggtcgtacatcgtgcgcggcaagggcaacgtc
gacgcgtactgctcggcctcgcacggggccgggcggcggatgtcgcgggggcaggcgaag
cggacgtacagcaccgccgacctggccgcgcagacggcgggcgtcgagtgccgcaaggac
gccggggtggtcgacgagatccccggcgcgtacaaggacatcacccaggtgatggcccag
caggaggacctggtcgaggtggtcgcccacctcaagcaggtcgtctgcgtgaagggttga
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