Micromonospora halotolerans: RMN56_26330
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Entry
RMN56_26330 CDS
T09415
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mhaw
Micromonospora halotolerans
Brite
KEGG Orthology (KO) [BR:
mhaw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mhaw03016
]
RMN56_26330
Enzymes [BR:
mhaw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RMN56_26330
Transfer RNA biogenesis [BR:
mhaw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RMN56_26330
Prokaryotic type
tRNA splicing ligases
RMN56_26330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WNM38619
UniProt:
A0ABY9ZTK7
LinkDB
All DBs
Position
5599468..5600886
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AA seq
472 aa
AA seq
DB search
MDLVEESPYRFRIDRHEPMRVPGVVFASRALLPDAGADKSLEQVANVATLPGIVDASYAM
PDVHWGYGFPIGGVAATDVENGGVVSPGGVGFDISCGVRLLTADLDRDALRPRLDAVMDG
LSESTPRGMGKGAVWHLTDGAELDAVLRGGSRYAVERGFGVQRDLDRCEDYGAVGDANPA
QVSERAIERGARQVGSLGSGNHFLEVQAVEEIYDGAVAEAFGLRAGQVCVMIHSGSRGLG
HQICTDYVREMEKVMPRHGIHVPDRQLACAPVSSHEGRAYLGAMAAAANYARANRQLLAH
AARQVFARVTGCDLDLVYDISHNLAKIETHDVDGAPRPLCVHRKGATRALPPGHPELPDD
LRPAGQPVLIPGSMGTGSYVLTGVAGSPAWASTCHGAGRVQSRKQATRAVAGHDPRRELE
AQDIAVRGASRRGLAEEMPAAYKDVTAVVAAAEGAGLCRKVARLVPLGVVKG
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggacctggtcgaggagtcgccgtaccggttccggatcgaccggcacgagccgatgcgg
gtgccgggcgtggtcttcgcctcccgcgcgctgctgccggacgccggggcggacaagtcg
ctggagcaggtggcgaacgtggccactctgcccggcatcgtggacgcctcctacgccatg
ccggacgtgcactggggctacggcttcccgatcggcggggtcgccgccaccgacgtcgag
aacggcggagtggtgtcgcccggcggggtcggcttcgacatctcctgcggggtccggctg
ctcaccgccgacctggaccgggacgcgctgcgcccccggctggacgccgtcatggacggc
ctcagcgagtccaccccgcggggcatgggcaagggcgccgtgtggcacctgaccgacggg
gccgaactcgacgcggtgctccgcggcggctcccggtacgccgtcgagcgcggcttcggt
gtccagcgggacctggaccgctgcgaggactacggcgcggtgggcgacgcgaacccggcc
caggtgagcgagcgggcgatcgagcgcggggcccgccaggtgggcagcctcggctccggc
aaccacttcctggaggtgcaggcggtggaggagatctacgacggggccgtggcggaggcc
ttcgggctgcgcgccggccaggtctgcgtcatgatccacagcggttcgcgggggctgggc
caccagatctgcaccgactacgtccgggagatggagaaggtgatgccccggcacggcatc
cacgtgcccgaccggcagctggcctgcgcgccggtctcgtcccacgagggccgcgcctac
ctcggggcgatggccgccgcggccaactacgcccgggccaaccggcagctgctcgcccac
gccgcccggcaggtgttcgcccgggtcaccggctgcgacctcgacctggtgtacgacatc
tcgcacaacctcgccaagatcgagacgcacgacgtggacggggcgccgcgcccgctctgc
gtgcaccgcaagggcgccacccgggccctcccgccgggacaccccgaactgcctgacgac
ctgcgcccggccgggcagccggtcctcatccccggctccatgggcaccggctcgtacgtg
ctcaccggcgtggccggctcgccggcctgggcgtccacctgtcacggcgcgggccgggtg
cagagccgcaagcaggccaccagggcggtcgccgggcacgacccgcgccgcgagctggag
gcgcaggacatcgcggtgcggggcgccagccggcgcgggctggccgaggagatgccggcc
gcgtacaaggacgtcaccgccgtggtggcggcggccgagggtgccggcctgtgccggaag
gtggcccggctcgtgccgctcggcgtggtgaagggctga
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