Methanohalophilus halophilus: BHR79_01315
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Entry
BHR79_01315 CDS
T04572
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mhaz
Methanohalophilus halophilus
Brite
KEGG Orthology (KO) [BR:
mhaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mhaz03016
]
BHR79_01315
Enzymes [BR:
mhaz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BHR79_01315
Transfer RNA biogenesis [BR:
mhaz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BHR79_01315
Prokaryotic type
tRNA splicing ligases
BHR79_01315
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
APH38254
UniProt:
A0A1L3Q050
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All DBs
Position
complement(268199..269680)
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AA seq
493 aa
AA seq
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MKRGFDRMDTEGPEIEGLERIDNDIWQVPIGYKPGMRVPGRIYLSDKLFTNLEKEAVDQV
ANVATLPGIQKFSMAMPDAHVGYGFPIGGVAAFDAEEGVISPGGVGFDINCGVRLIRSNL
EKSDVDGKVNDLLDSLFKAVPSGVGSKSRIRASESELEAIFTNGSRWAVEQGYGVEADLT
HCEGEGCIEGSDPAQVSAKAHKRGRPQLGTLGSGNHFLELQYVDEIYDPVAAEAFNLKQG
QLTFMVHCGSRGAGHQVCTDHLRNLTRAVEKYKIDLPDKQLACAPAQSEEAQAYFGAMAS
AANYAWTNRQIIMHHCREVFEQQMNMDVDELGLDLVYDVAHNVAKLEEHDVNGGKKQVYV
HRKGATRAFPAGHPDVPQAYRDVGQPVLIPGSMGTPSYVLCGKQSAMDVSFGSACHGAGR
VMSRSGAKHTFRGEEIQKDLSGQGISVKAAHPSVIAEEAPGVYKSSSEVVDVVHRLGIAG
KVAKLMPLGVVKG
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaggggatttgataggatggatacagaaggacctgaaatagaaggacttgaacgg
atagataatgatatatggcaagttcccatcggctacaaacccgggatgagggtaccgggc
aggatatatctttcagataaattgttcaccaatctggaaaaggaagcagttgaccaagta
gccaatgtggccaccctgccaggaatacagaaattctcaatggcaatgcccgatgcccat
gtaggatatggtttccccatagggggagttgccgcttttgatgccgaggaaggtgtcatc
agtcccggaggcgtgggatttgacatcaattgcggtgtacgcctgatcaggtccaacctg
gaaaaatccgatgtggacggtaaagtcaatgacttgctggattcccttttcaaggctgta
ccttcgggtgtgggttccaaaagccgcatacgtgcatcggaaagtgaacttgaagccata
ttcactaatggctcccgctgggctgtggagcagggttatggtgtagaagctgatcttacc
cactgtgaaggtgaagggtgcattgaaggaagcgaccctgcacaggttagtgccaaagcc
cacaaaagaggcaggccacagcttggaaccctgggaagcggcaatcatttcctggaattg
cagtatgtggatgagatatatgatccggtcgcagctgaagcctttaatctcaaacagggc
cagcttactttcatggtccattgtggatcgcgaggtgcgggtcatcaggtatgcaccgac
cacttgcgcaatctcacccgtgcagtggaaaaatacaaaatcgatctgcctgacaagcag
cttgcctgtgcaccggcacaatcagaagaagcacaggcttatttcggtgcaatggcctca
gcagccaactatgcctggaccaatcgtcagatcataatgcaccactgtcgcgaagttttt
gaacaacaaatgaatatggatgtggatgaattgggtttggatctggtctatgatgtagcc
cacaacgtcgccaaactggaagaacatgatgtaaacggtggaaaaaaacaggtctatgta
catcgcaagggtgccacccgtgctttccctgcaggccatcccgatgtccctcaggcttat
agggatgtaggtcagccggtgcttattcccggcagtatgggcaccccctcctatgtgctc
tgcggtaagcagtcagcaatggatgtatcctttggaagcgcctgtcatggtgctggcagg
gtaatgagtcgctccggtgcgaaacacactttcaggggagaagagatccaaaaagacctc
agtggtcagggcatttctgtcaaggcagcccacccttcggtcattgccgaagaagcacct
ggagtttacaaatccagcagtgaggttgtggatgttgtacacaggcttggtattgcaggt
aaggtcgcaaaactcatgcctctgggtgttgtaaaaggttaa
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