Candidatus Mycoplasma haematominutum: MHM_03900
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Entry
MHM_03900 CDS
T02582
Symbol
rpoBC
Name
(GenBank) DNA-directed RNA polymerase, beta and beta' subunit
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
mhb
Candidatus Mycoplasma haematominutum
Pathway
mhb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mhb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MHM_03900 (rpoBC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhb03021
]
MHM_03900 (rpoBC)
03400 DNA repair and recombination proteins [BR:
mhb03400
]
MHM_03900 (rpoBC)
Enzymes [BR:
mhb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MHM_03900 (rpoBC)
Transcription machinery [BR:
mhb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MHM_03900 (rpoBC)
DNA repair and recombination proteins [BR:
mhb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MHM_03900 (rpoBC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Anoctamin_N
Motif
Other DBs
NCBI-ProteinID:
CCE66908
UniProt:
G8C3L0
LinkDB
All DBs
Position
complement(360297..368273)
Genome browser
AA seq
2658 aa
AA seq
DB search
MDYSFKDVNSLVRRIDFSKFSSGELSPPNLRGIQIESYNQFLKQGIKDLIFRYFPLSSAS
GNTQLFLEEVLVKSPEETEEDAIDKSKSYQCSLYLKLKLVTRHDGKAAKTTHSKIFFGNL
PVFSSSDNFIINGTEKFVISQIVRSPGLYALFKSHIRLSNSRKRSLEGIVCELLPVKGVL
VLFHLSNEKNSDGAIKLVARTTSGMNAFTCPVSIFLKAFGVPHRALENIFSEHTELTRSL
KQEMYNPEAIKGDQSFLAIMQEISHTKNLQKLRDFSRSWVKQTIYSLCIEYSELEKNANT
SKKRELLDKIYIELAAKHIVSELAINPEVARREVYSYQELLFSYFLDKYYYLLHPAGRYK
LNHKLSVWERMKNKYLAQDVLDKSGKLAFPAKTFFDFDTYSKFRELAMEGKLQIQHQFKP
ILTFDDAGNRYPEHRKEIIYEKVDIYSAGLDSEIITLVGTPYLPDQTPLYPADFLAIISY
IIQLKHKIGEYDDIDNLGNKRLKLVDELLENKIILAMARMQKFSIDKMNSLEAKLNYYSL
QDGELENYFSISSILNTKPFQIVIKEFFNSHQLVQFLDQQNVLSELTNKRKISAMGPGGI
KREDPNLHIRDVHYSYYGRICPIETPEGMNIGLIMALAALSKVDKYGFINTPYFKVKGGV
ITKEIVWLSSIQERGFYIAAATTERDEKGRLKGPVTVRRDSDVETVEPEEVHFIDVDCSQ
MTSISTCLIPFMEHDDANRVLMGANMQRQAVPLVSPKSPIVATGAENRIARDSGVVVFAE
GDGEITYRDSSILEVKYNSAKLGTKQYRLQKFHKSNQNTCKNQTLILKDSKTVKKGEILI
DGHAMQNGELSLGQNILVAFTTWYGYNYEDAIILSSKLVQDNVYTSFHIQEYTVECMRTK
IGDEEITRFIPGCLPEQKKYLDEDGIILVGAYVKEGDILVGKTSPKALGDITPEERLLQA
IFAEKARSVKDSSLRLPSGTEGTVTRVLRYSRHKGDRLSDDVLETVKIYVTSKRNIQVGD
KMVGRHGNKGIVSKIVPVEDMPYLEDGTPIDILLNPLGVPSRMNIGQILESYLAFSARRL
VFKKVIDAYFSSELTELSSLFSRPKAELAVLNKVMKAYLTKKKIKTAEEAHRKLTQLDFS
VILSQSGLKYDELEIKVLTPIFAGCKHLDLIKIMSDAGIDHEAHNGRFTLYDGKTGEKFK
DPISVGIIYMLKLDHMVDDKIYARSVGPYSKITQQPLGGKCQNGGQRFGEMEVWAMEAYG
AAYNLRELLTLKSDDIQARNMIYYSVIKGQALPTPGISESFKLLVKKLQALGLKVNIRYG
AKKELIGFDEYLTKRVQNSEYLQSLTWSNQAVKDEKDFLKGYDMFFEEEGEPEDLSINGV
QISITSPEYLLSLSRGEVKSSETINYKTFKPEKGGLFCEAIFGPVKDYECSCGKYKRVRF
RGKYCEKCGVCITESIVRREWMGHISLACPIAHIWMIKELPLPSKISLMLGIKYKSIEEI
VYFVSYVVIEVSDIGFNHQNLFQKSEIVNVSDQDSPLRSLYKLRRLLRLICEDIERKEPE
GKEAMTYQQGRAYYKALAYSNLPFSLADVFEYIYKFSGIKISTGAEAIYELLKKVDLDSL
EYALQKQLKKDSAGDELNYGDSRIKRTLARLEVVRWFKQSGNKPEWMILRNLLVLPPNLR
PIVQLDAGRFTTSDLNLFYRRIIIRNERLKRILSLNVTSIIANNEKRMLQEAVDSLIDNA
SRKKPLVAKDKHLLKSLTDHLKGKQGLFRQNLLGKRVDYSGRSVVVVGPELKLHQTGLPI
LIVLKLFKPFIIRELIRTVTDEITGERTQLAPNIRIAEEMIENQSDVIWPIVHRVMRERP
VLLNRAPTLHSLGIQAFEPVLVDGKAICLHPLVTTAFNADFDGDQMAVHLPLSDEAVKEA
RAMLLAPWHVLAPKNGQPILMPSQDMVLGLYYLTNTRKGVKGEGKLCSSQEEVIYLYRTG
GLDLNAHIAIPTTAYAKKKWIKEGMIITTPGKVIFNSILPPDYRFVNESGGSFLSEEDIV
PFGEKVDSKISAIEEKLPFNKGVIQTIIEEVFGAYPIEVTATMLDNIKSLGFEYSTKSCV
TISPFDIPRFKDSFKSDLIEAAEAKVREQREFFELGMINDDERYQNVISLWNEVKDKVSD
KVRDWFRSKEFRDNPMAIMERSGARGSLSNFVQLSGMRGLMNRSYNYGQNVDSEIVRDTI
EVPIKHSFIEGLNMIEYFNSSYGSRKSMADTAVKTAKSGYMTRKLVDASQEVIVKELDCD
TNRSLRVSAIKLEGSEKEIKTLEERIRNRCVYSEVVHPESGAVLCAKGEYITKEKAKAIV
ESGITSVEVRSPFTCFTEQGICQKCFGINLTTGAPVEVGTAIGVIAAQSVGEPATQLTMR
TFHSGGVAGEHNITQGFERIKQIFDIVSPQKFQEAIITEISGTVKSVDKKGELNVVIVKN
EKCTRKYEIDFRKPLLVSEGDNVKYGDRLSEGIIDLRKYLSIAGLDQVRQYMVEEILKVY
WLQGIDLSDRYIELIVRQLTSKWKIIDAGASGWSVGDIVDDEKYRWNVKKLMLTKKAPPV
AVPVLFGLEDVPSRSGSYLAAASFQDTRKNLIDAAVQSRTDELKHLKENIIVGNLIPSGT
GHLLDWVVRERLIEGAFV
NT seq
7977 nt
NT seq
+upstream
nt +downstream
nt
ttggattactcctttaaagatgtaaactcactagtacgtaggatagatttttctaagttc
tcctcgggagaacttagtcctcctaacctaagggggattcagatagaatcatacaatcaa
ttcttaaagcagggaataaaagatttaatatttagatattttccactctcttcagcttcg
gggaatacccaactattcctagaagaggtattagttaaatcaccggaagagactgaagaa
gacgcaattgataaatctaagagctatcagtgctctctatatttgaaactcaagttagtt
acaagacatgatggtaaagctgctaaaactactcattccaagatattctttggaaatctc
ccagtattctcctcttctgataatttcatcattaacggtactgaaaaatttgtaattagt
cagatagttagatctccaggattatatgctctctttaagtctcacattagattgtctaat
tctagaaagcgtagtctagagggaatagtatgtgagcttttacctgttaagggagtatta
gtattatttcatctatctaatgagaaaaactctgacggtgctattaagttagttgctaga
actacctccggaatgaatgcatttacctgtccagtttctattttcctgaaagcttttgga
gtacctcatagggctctagaaaatatcttttctgagcatactgaactaactagatcactg
aaacaagagatgtataaccctgaagctataaagggagatcagtcattcttagcaatcatg
caggagattagtcatactaagaatctccaaaagctaagagacttctccagaagttgggta
aaacagacaatttatagtctttgcattgaatactcagaattagaaaagaatgctaatacc
tctaagaagagggaattactggacaaaatctacatagagttagctgcaaaacatatagtt
tcagagttagcaattaatcctgaagtagctagaagagaggtttactcttatcaagaatta
ctcttctcctactttttagataagtattactatttacttcatcctgcaggaagatataaa
ttgaatcacaaactctctgtgtgggagcgaatgaaaaataagtatttagcccaagatgtg
ttagataagtcaggaaagctagcctttcctgctaagactttctttgactttgatacatac
tctaaatttagggaattagcaatggaagggaaactccaaattcaacatcagtttaaacct
atactcacattcgatgatgcaggaaatagatatcctgaacataggaaagaaattatatat
gaaaaggtagatatatattctgcaggactagactctgagattattacacttgtgggaact
ccctatcttcctgaccagacaccactgtatcctgcagacttcctagctattatctcctac
attattcagttgaagcataagatcggagaatatgatgatatagacaacctaggtaataag
agactgaagttagtagatgagttactggaaaacaagataattcttgcaatggctagaatg
cagaaattctctatagataagatgaatagcttagaggctaaactgaattactattcactc
caagatggagagctagaaaactacttttctattagctctatactgaatacaaagcctttc
cagattgtaattaaggaattctttaattctcaccagttagtgcagtttttggatcaacag
aatgtactctctgaactaacaaataagagaaaaatttctgcaatgggacctggaggaata
aagagggaggatccaaaccttcatattagggatgtacactactcatattatggtcgtatc
tgtcctatagaaactccagaggggatgaatattggactaattatggctttagctgcactc
tccaaggtagataagtatggatttataaatactccctactttaaagtgaaaggaggtgta
attactaaggagatagtctgactaagttctatacaggagcgagggttctatatagctgca
gctactacagagagagatgagaagggaaggttaaagggtcctgtcacagtgagacgagac
tctgatgtagagacagtagaaccagaagaggttcactttatagatgtagattgttctcaa
atgacctcaatttctacctgcttaattccgtttatggaacacgatgatgctaacagagtg
ttaatgggagctaatatgcagcgtcaagcagtcccattagtttctcctaagtcccctata
gtggctacaggtgcggaaaacagaatagcgagagactcaggagtagtagtatttgcggaa
ggagatggagagatcacctaccgtgacagtagtattttagaggtaaagtataattctgca
aagttgggaactaaacagtatagactgcagaaattccacaagtctaatcagaatacatgc
aagaatcagactctaatcttgaaagactctaagacagttaagaagggagagattctaata
gatggtcatgcaatgcaaaatggagaactttcactgggtcaaaatattttagtggcattt
actacctgatatggttacaactatgaggatgcaataattctctcctctaaacttgtacag
gataatgtatacacatcttttcatattcaggaatatacagtagagtgtatgagaaccaag
ataggagatgaggagataacaagattcattccaggctgtctacctgaacagaaaaaatac
ctagatgaagacggaattatactagtaggagcttatgttaaggagggagatattctagta
ggaaaaacatctcctaaagccctgggagatattacacctgaggagagattgctgcaggct
atttttgctgaaaaagctagaagtgttaaagactcttcactgagattaccttcaggtaca
gagggaactgtaactagagtactcagatactctagacataaaggggatagactctctgat
gatgtactagaaacagtaaagatttatgtaacttctaagcgaaatatacaggtaggagat
aagatggtaggacgacatggaaataagggaattgtctctaaaatcgtaccggtagaagat
atgccttacctggaagacggtactcctatagatattcttttgaatcccctaggagtacct
tctcggatgaatataggtcaaatactggagagttatctagcattctcagctagaagattg
gtattcaagaaggtaatagatgcttatttctctagtgaattaacagagttaagctctctt
ttctctagacctaaagctgagttagctgtacttaataaagtgatgaaagcttacctaact
aagaaaaagataaagactgctgaagaggctcataggaagttaacccagttagatttttct
gtaatactttcacagtctggattaaagtatgacgagttagaaattaaggtattaactccg
atatttgcaggatgtaagcacctagatttgataaagattatgtctgatgctggaatagat
catgaagctcataatggaagatttacactatacgatggtaaaacaggagaaaagtttaaa
gatcctatttcagtaggaattatctatatgttgaagttagaccatatggttgatgacaag
atatatgctagatctgtaggaccttattctaagataacccaacaaccgttgggaggtaag
tgtcaaaatggagggcaacgttttggagaaatggaggtctgagctatggaagcatacgga
gctgcctacaatttgcgagaactcctaacactgaagtctgatgatattcaggctagaaat
atgatctactactctgtaattaaaggtcaagctttgcccactccgggaatctctgagtca
tttaagctcttggtgaagaaacttcaggcactaggacttaaggtaaatatcagatatggt
gcgaaaaaagagttaatagggtttgatgaatatctaactaagagagtgcaaaatagtgag
tatctacagtctctcacctggagcaaccaggcagtaaaagatgagaaggactttctgaag
gggtatgatatgttctttgaggaagagggagaaccggaagacttaagcattaacggtgtg
cagataagtattacctctccagagtatctactctctctgtccaggggagaggttaaatct
tctgaaacaataaactataagacctttaagcctgagaagggaggactcttctgtgaagcc
atcttcggccctgtgaaagactatgagtgttcatgtggtaagtataagagagtgagattt
agaggcaaatattgtgagaaatgcggcgtttgcattactgagtcgatagttagacgagag
tgaatgggtcacatttcacttgcatgccctatagcccacatctgaatgattaaggagttg
ccgctgccttctaaaatctccctaatgttaggaattaagtataagagtatagaagaaata
gtttactttgttagctatgtagttattgaagtgtcagatataggatttaaccaccagaat
ttattccaaaagtctgagatagttaatgtttcggatcaagatagtccacttcgatcactt
tacaaacttagaagactactgagacttatatgtgaggatatagagcgtaaagaaccggaa
ggtaaggaagctatgacctatcaacagggaagggcttactataaagcactagcctattca
aatcttccattttcactagctgatgtgtttgagtatatatacaagttcagtggaataaaa
ataagtactggagcagaggctatatatgaattactgaaaaaagtagacctagattccctg
gaatatgcacttcaaaaacaactgaagaaggatagtgcaggagatgaattaaactatggg
gattctaggattaaacgcactctcgcgagattagaggtagttaggtgatttaagcagtca
ggaaataaacctgagtgaatgatacttagaaatctactagtgttgcctcctaatttgagg
ccgatagtgcagttagatgcaggaagatttacaactagtgacttgaacttgttttataga
cgaataattattagaaatgagcgtttaaagagaatacttagtctaaatgtgacctcaata
attgctaataatgagaagagaatgttgcaggaagctgtagactctctaattgataatgca
agtagaaagaaaccgctagtagctaaggataaacacttacttaaatctctaaccgatcac
ttaaagggtaaacagggattatttagacaaaatctgctaggtaagagagtagattattct
ggaagatctgtagtagtagtaggacctgaattaaaacttcaccagacaggattacccata
ctcatcgtcttgaagttatttaagcctttcattattagagagttgattagaactgttaca
gatgagataacaggggagagaactcaattagcacctaatatacgtatagctgaagaaatg
atagagaatcaatcagatgtaatttgacctatagtgcatagggtgatgagggaaagacct
gtattgcttaatagagctcctacactacacagtcttggaattcaagcgtttgaacctgtg
ctagtagatggtaaggctatttgtctgcatcctttagtaactactgcatttaatgctgac
tttgatggtgaccagatggcggttcaccttccactctcagatgaagcagtaaaagaggct
agggcaatgttgttagctccctgacatgtgttagctccaaagaatggtcaacctatactt
atgccttcccaagatatggtgctaggactatactatctaaccaatactagaaagggagta
aagggagagggtaaactatgttctagtcaggaagaggtaatttacctatatagaacggga
ggcttagacttgaatgcccatattgctattcctacaacagcatatgctaagaaaaagtga
attaaggagggaatgattatcactactcctggaaaggtaatatttaactctatacttcct
cctgactatagattcgtaaatgagtcaggaggaagtttcttaagtgaggaagatatagtt
ccctttggagagaaggtagatagtaagatttcagcaatagaggagaagttgccattcaat
aagggagtgattcaaactattattgaagaggtgtttggagcttatcctatagaggttact
gcaacaatgttagacaatattaaatcactaggatttgaatactctactaaatcttgtgta
actatttctccatttgatattcctagatttaaagattcatttaagtctgatttaattgaa
gctgcagaagctaaggttagggaacaacgagaattttttgaattaggaatgattaatgat
gatgagagatatcagaatgttatctctctctgaaatgaggtaaaagataaggtatctgat
aaggtaagagactggtttagaagtaaagagtttagggataatcctatggctattatggag
cgatcaggagctaggggaagcttatctaattttgtacaactttcaggaatgagaggatta
atgaataggtcttacaattatggtcaaaatgtagactctgagatagttagggatactata
gaagtacctattaaacattcatttatagagggattaaatatgattgaatactttaattct
tcctatggttctagaaagagtatggctgacactgctgtgaagactgctaaatcaggatat
atgactagaaaattagtagatgcttctcaagaggtaatagttaaggagctagactgtgac
actaatagatcattaagggtaagtgctattaagcttgaaggttctgagaaggaaattaag
acactggaggaacgtattagaaatagatgtgtctatagtgaggtagttcatccagaaagc
ggtgctgtattatgcgctaagggagaatatattactaaggaaaaggctaaagctatagtt
gaatcaggaataacttcagttgaggtgagaagcccttttacctgttttactgaacaggga
atttgtcagaaatgttttggaattaacttgactacaggcgcaccggtggaggtcggtact
gctataggagttattgctgctcagtcagtaggagaacctgcgacccagctaactatgaga
acttttcactcaggaggagttgcgggagaacataatattacacaggggtttgaacgaatt
aagcagatatttgatatagtctctccccagaaatttcaggaggcaattattactgagata
agcggtactgttaaatctgtagataaaaaaggagaacttaatgtagtaatagtgaaaaat
gagaagtgtactcgaaaatatgagatagactttagaaaaccactattggtttcagaggga
gataatgttaaatatggagatagactttcagagggaataatagatttgagaaaatatctc
tctattgcgggattagatcaagttagacagtatatggtggaggaaatattgaaagtttac
tgattgcagggaattgacttgtctgacagatacattgagttaatagtgcgtcagttaacc
tctaagtggaagattatcgatgccggtgcctcaggatgaagtgtaggagatatagtagat
gatgaaaaatataggtgaaatgtgaaaaagttaatgttaactaagaaggcccctcctgtt
gcagtgccggtactcttcggacttgaagatgtaccttcgaggtccggttcttatttggct
gcagcatcattccaggatactcgaaagaacttgattgatgctgcagtgcagtctagaaca
gatgagttaaagcacttgaaggaaaatatcattgtaggtaatttgattccctctggaaca
ggccatctacttgattgagtagtgagagagagattgattgaaggagcatttgtttag
DBGET
integrated database retrieval system
