Marinobacter nauticus ATCC 49840: MARHY0513
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Entry
MARHY0513 CDS
T02083
Symbol
rpoD
Name
(GenBank) sigma D (sigma 70) factor of RNA polymerase
KO
K03086
RNA polymerase primary sigma factor
Organism
mhc
Marinobacter nauticus ATCC 49840
Pathway
mhc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mhc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MARHY0513 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhc03021
]
MARHY0513 (rpoD)
Transcription machinery [BR:
mhc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MARHY0513 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Cwf_Cwc_15
RRN3
NAM-associated
Motif
Other DBs
NCBI-ProteinID:
CCG94009
LinkDB
All DBs
Position
complement(544789..546651)
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AA seq
620 aa
AA seq
DB search
MSMSGNSQKSRLKDLIARGKEQGYLTYAEVNDHLPEDIADPDQVEDIIRMINDMGIQVCE
ETPDADTLLMTEGDSTADEAAAAEAAAALAAVETDAGRTTDPVRMYMREMGTVELLTREG
EIVIAKRIEEGIRDVMAAVAHFPGTAGTVIQAYDRIIENEGRISDIVTGFLDPDDAEPFM
GEDTSTEDTSADDSDASSDDDDDDTSSEDDNDNGPDPEETRLRFELLKEKLDAAEKALAK
HGRGHKKTQEALNELGQVFAPFKLANKAFDELVNVVRSTNDLVRENERAIMQICVRDCKM
PRKDFIKWFPGNETDLEWAGEIAATKKPYAAAIGERVDEIVRLQKRIQNVQTEVDLDVAD
IKEINRRVSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDIQALSPVDSATA
EGLREATRSVLAGLTARESKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSDHLRGFIDDQGNG
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
gtgtctatgtcaggcaattcgcagaaatcacgtttgaaagacctcatcgcacgaggcaag
gaacaaggttacctgacttacgccgaggtaaacgatcacctcccggaagatatcgcagat
ccggatcaggttgaagacattatccggatgatcaacgacatgggtatccaggtgtgcgaa
gagacaccagacgcggataccctgctgatgaccgaaggtgactccactgccgacgaagct
gctgccgccgaagccgctgctgctcttgctgccgttgagaccgacgctggccgcaccaca
gatccggtgcgcatgtacatgcgcgagatgggcactgttgagctgctgacccgcgaaggc
gaaattgtcatcgccaagcgcatcgaggaaggcattcgcgatgtcatggccgctgtagca
catttcccgggcaccgccggcaccgtgattcaggcctacgaccgcatcatcgagaatgaa
ggtcgcatcagcgacatcgtgaccggcttcctcgacccggacgacgccgagccgttcatg
ggtgaagacaccagcaccgaagacacctctgctgatgacagcgatgccagcagcgatgac
gacgatgacgacacctccagcgaagacgacaacgacaacgggccagatccggaagaaacc
cggctgcgcttcgagctgctgaaagagaagctggacgctgccgagaaggccttggccaaa
cacggccgcgggcacaagaaaacccaggaagccctgaacgaactgggccaggttttcgcc
ccgttcaagctggccaacaaggcgtttgacgaactggtgaacgtcgttcgttcaaccaac
gacctggtccgcgagaatgagcgcgccatcatgcagatctgtgtacgcgactgcaaaatg
ccgcgcaaagacttcatcaaatggttcccgggcaacgaaactgatcttgagtgggccggc
gaaattgccgccaccaaaaagccctatgcggccgcgatcggtgagcgtgtggacgaaatc
gttcgcctgcagaagcgcatccagaacgttcagaccgaagtagacctggacgtggccgac
atcaaggaaatcaaccgccgggtgtctatcggtgaggcgaaagcccgccgcgccaaaaag
gaaatggttgaggccaacctgcgtctggttatttccatcgccaagaaatacaccaaccgc
ggcctgcagttcctcgatctgatccaggaaggcaacattggcctgatgaaggcggtggac
aagttcgagtaccgtcgtggctacaagttctccacctacgctacctggtggattcgccag
gccatcacccgctccatcgcggatcaggcccgcacgatccggattccggtgcacatgatc
gagacgatcaacaagctcaaccgcatctcccgccagatgctgcaggagatgggccgcgag
cccacacccgaggagctgggcgagcgcatggatatgccggaagacaagatccgcaaggtg
ctgaagatcgccaaggagccgatctccatggaaacacccattggtgacgacgaagacagc
catctgggcgatttcatcgaagatatccaggctctgtcgccagtggattctgccaccgct
gaaggcctgcgcgaagccacccgctccgtgctggccggcctgaccgctcgggaatccaaa
gtactgcgcatgcgctttggtatcgagatgaacaccgaccacactctggaagaagtcggc
aagcagttcgacgttacgcgggagcgtatccgtcagatcgaagccaaggccctgcgcaaa
ctgcggcacccttcccgctccgatcacctgcgcggcttcattgacgaccagggcaacggt
taa
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