Marinobacter nauticus ATCC 49840: MARHY0816
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Entry
MARHY0816 CDS
T02083
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase, cold shock protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mhc
Marinobacter nauticus ATCC 49840
Pathway
mhc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MARHY0816 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhc03019
]
MARHY0816 (deaD)
03009 Ribosome biogenesis [BR:
mhc03009
]
MARHY0816 (deaD)
Enzymes [BR:
mhc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MARHY0816 (deaD)
Messenger RNA biogenesis [BR:
mhc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MARHY0816 (deaD)
Ribosome biogenesis [BR:
mhc03009
]
Prokaryotic type
rRNA helicases
MARHY0816 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CCG94299
LinkDB
All DBs
Position
complement(853595..855181)
Genome browser
AA seq
528 aa
AA seq
DB search
MRQNHALPLQCDTLRIPSTFMSELSFAELGLDPAVLEAVSAVGYETPSPIQAQSIPALLA
GNHLLGVAQTGTGKTAAFALPLLSRIDANVAEPQILVLAPTRELAIQVAEAFTTYASKFR
NFHVLPIYGGQDFSPQIRGLKRGAQVIVGTPGRMLDHLRKGTLKLDGLKALVLDEADEML
RMGFIDDVEAILAKTPDTCQRALFSATMPPQIKKVAQTYLKNATEVRIESETRTVERIAQ
FVLPVYAERKLDALTRILEVEPFDASIIFVRTKAETTMLAEKLSARGHAVAPLSGDLNQR
QREQTVEDLKRGKKDIIIATDVAARGLDVPRITHVINYDVPYDTEAYIHRVGRTGRAGRT
GKAILLVTPRERSWLRTLERATNSPMEPYQLPSPAALQKMRVEQFEAQLLGFTDDPRAAK
AIALLDEIAERNDMDMAAIAGAMACLLEASQPDSLPLEQPEALPEISAAPRRDRKGPPPG
KGGFRKGGPGKKFSKDGKPGFRKSGPKGGKPAGKGGKPAGKGPKRAPR
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgcgccaaaatcatgcattgcctttgcagtgcgataccctccgaataccgagtacattc
atgtcagaattgtcttttgccgaactggggctggatccagcagtactggaagccgtctcc
gccgttggctatgaaaccccgtcgcccatccaggcgcaatccatccctgctctgctggcc
ggcaaccacctgttgggcgtcgcccagacaggcaccggcaagaccgcagccttcgccctg
ccattgctgagccggattgatgctaacgtggccgagccacagattctggtgctggcccct
acccgggagctggcgattcaggtcgcggaagcgttcaccacctacgccagcaagttccgc
aattttcatgttctgccaatttacggtggccaggatttctcaccacagattcgcggcctc
aagcgtggcgcccaggttattgtgggcacacctggccgcatgctcgaccatctgcgcaag
ggcaccctgaagctcgacggcctgaaggcactggtgctggacgaagccgacgaaatgctg
cgcatgggcttcattgatgacgtggaagccatcctggcgaagacgccggacacctgccag
cgcgcgctcttctcggccaccatgccgccacagatcaagaaggttgcgcagacttacctg
aaaaacgctaccgaagtaagaatcgagagcgaaacccgcacggttgaacgcatcgctcag
ttcgtgctgccggtctacgccgagcgcaagctggatgcgctgacccgcattctggaagtt
gagccatttgacgcctcgatcattttcgtgcgcaccaaggccgaaactaccatgctggca
gagaagctgtccgcacgcggccacgctgtggcgcccctgagcggcgacctgaaccagcgt
cagcgcgaacagaccgttgaagatctcaagcgtggcaaaaaagatatcatcattgccacc
gatgtcgccgcccgtggtctggacgtaccccggattacccacgttatcaactacgatgtg
ccctacgacaccgaggcctacatccaccgggttggccgtaccggccgtgccggtcgcacc
ggcaaggctatcctgctggtgactccgcgtgagcgcagctggctgcgcactctggagcgg
gccaccaactccccgatggaaccgtaccagctgccgtcacctgccgccctgcagaaaatg
cgggtagaacagtttgaggcgcagctgctgggcttcaccgacgatcctcgcgccgccaag
gccatcgccctgctggatgagatcgccgaacgtaacgacatggacatggccgccatcgct
ggcgccatggcctgcttgctggaagcctcccagccggattctctgccactggaacaaccg
gaagcactgcccgagatttccgccgcgcctcgccgggatcgcaaaggcccgcctccgggc
aaaggcggcttccgcaaaggcggccctggcaagaagttcagcaaggatggcaaacccggc
ttccgcaagagcgggccgaaaggtggcaagcccgccggcaagggcggcaagcctgcagga
aaaggccccaagcgcgcgccgcgctga
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