Marinobacter nauticus ATCC 49840: MARHY0852
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Entry
MARHY0852 CDS
T02083
Symbol
rnr
Name
(GenBank) exoribonuclease R, RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mhc
Marinobacter nauticus ATCC 49840
Pathway
mhc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MARHY0852 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhc03019
]
MARHY0852 (rnr)
03016 Transfer RNA biogenesis [BR:
mhc03016
]
MARHY0852 (rnr)
Enzymes [BR:
mhc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MARHY0852 (rnr)
Messenger RNA biogenesis [BR:
mhc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MARHY0852 (rnr)
Transfer RNA biogenesis [BR:
mhc03016
]
Prokaryotic type
tRNA degradation factors
MARHY0852 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_HELZ2
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
CCG94334
LinkDB
All DBs
Position
889275..891722
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AA seq
815 aa
AA seq
DB search
MVSRKNKQSDPHAQREAQKYDNPIQSREYILQHLKERGAPATHETLCQELGQTSAEGIEA
LRRRLIAMCRDGQLICNRRDAFLPIEEADLVTGRVVGHRDGFGFLIPDDGGSDLFLTARQ
MRQVFHGDRVAARVDQVDDRGRREGKIVEVLEHRTSQIVGRFFKESGIAFVVPENARINH
EILVPDEQAGKAVHGQYVVVEIIRQPTIRTQPTGQVIEILGEHMAPGMEIDVAIRSYEIP
HSWPPAVGEQAASIPAEVAEKDKANRVDIRNMRLVTIDDESARDFDDAIYCEPRPRGGYR
LVVAIADVSHYVRPGSPLDEEAIQRGNSVYFPDHVVPMLPEKLSNGLCSLNPDVDRLCMV
ADMTISAAGNISGYTFYQAVMRSHARLTYNKVSAMLEHPDTEQGYKLSAHYADLLPHLHN
LYDLYKLLRKARTERGAIDFETTETKIVFDAQRKIEEIVPVHRNDAHKIVEECMLCANVA
TARFLKKHKIPALYRVHDGPSEERLSNLRLFLGELGLQLGGGDKPSSADYQALLGQVADR
PDANVIQMVMLRSLSQAVYSPEEAGHFGLGFASYTHFTSPIRRYPDLIVHRAIKSRIHNP
EATKDLVSPKVHDPELAEYPYDYARMEQLGEHCSMTERRADDATRDVMAWLKCEFLRDHV
GEEYDGIIGAVVPFGFFVELSDIYIEGLVHVSTLSGDYFHHDAVKHRLIGERTAVSFRLG
DEVRVRVVRVDLEDRKIDLELVSTPRRRKADRDALEVSKREPRGKGKGGRSGKGQKSGKP
ASAKEKLAAEAAREARSKSAKGKPSGSGRKRKSRK
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atggtttccaggaagaacaaacaaagtgaccctcatgcccagcgtgaggcccagaaatat
gacaaccccatccagagtcgggagtacattctccaacatctgaaagagcggggcgcgccg
gccacgcacgagaccctgtgtcaggagctcgggcagacgtctgcggaaggaattgaagcg
ttgcgccgtcgtctgattgcgatgtgccgtgatggacagttgatctgtaaccgccgtgat
gcgttcctgccgatcgaggaagcggatctggtcaccgggcgtgtggttggacatcgtgat
ggtttcgggtttctgatccccgatgacggtggctccgacctgtttctgactgcccggcag
atgcgccaggtattccacggtgaccgggtagccgcccgggtggatcaggtggatgatcgc
gggcgccgggaaggcaagattgtagaagtgctggagcatcgcacctcccagatcgtcggt
cgcttttttaaagaaagcggcatcgccttcgtagtgccagagaacgccagaatcaatcac
gagatactggttccggatgagcaggctggtaaggcggttcacggccagtatgttgtggtg
gaaatcattcgtcagccgacgattcgaacccagcccaccggccaggttatcgagattctg
ggcgagcacatggcgccgggaatggaaatcgatgtggccattcgttcctacgaaatcccg
catagctggccgcccgcggtcggtgagcaggccgcctcgattcccgcggaagtggcagag
aaagacaaggcaaaccgggtggatatccgcaacatgcgcctggtgaccatcgacgacgag
agcgctcgtgacttcgatgatgccatttactgcgagcctcgtccccgtggtggctatcgg
ttggtggtggccatcgctgatgtctcccattatgtccgcccggggtcgccactggatgaa
gaggccattcagcgcggtaactcggtgtattttccggaccacgtggtgcccatgctgccg
gagaagctctccaatggcctgtgttccctgaacccggatgtcgaccgtctgtgcatggtg
gccgacatgaccatcagtgccgccggtaacatcagcggctacaccttctatcaggccgta
atgcgcagccatgcccggctgacctacaacaaggtcagtgccatgctggagcatccggat
acggagcagggctacaaactcagcgcccactatgcggatctgctgccacatctgcacaac
ctgtatgacctctacaagttgttgcgaaaggctcgcaccgagcgtggggccattgatttc
gagaccacggaaaccaagattgttttcgatgcccagcgcaagattgaggaaattgttccg
gtgcaccggaacgatgcccacaagattgtcgaagagtgcatgctgtgcgccaatgtggcg
acggcccgcttcctcaagaagcacaagattccggcgctttaccgggtgcacgacgggcct
tcggaagagcgtctgagcaatctgcgcctgttcctgggtgagctgggattgcagctgggc
ggcggcgacaagccgtcatcggcagattaccaggccttgctgggtcaggtggccgaccgc
ccggatgccaatgtcatccagatggtgatgctgcgctctctgagccaggcggtgtacagt
cctgaggaagccgggcattttggtcttggcttcgccagttatacccacttcacgtcgcca
attcgacgttacccggacctgattgtgcatcgggccatcaagtcccggatccataatccc
gaggcaaccaaagatctggtgtccccgaaggtgcacgatcccgaattggctgagtatccc
tacgattatgcccgtatggagcagttgggtgagcattgctccatgaccgaacgccgggcc
gacgatgccacacgggatgtcatggcctggctcaagtgcgagttcctgcgcgatcacgtg
ggcgaggagtacgatggcattatcggcgcggtggtgccgtttggcttctttgttgagttg
tccgatatctacatcgaaggtctggtacacgtctccacgctcagtggtgactacttccat
cacgatgccgtcaagcatcgtctgattggtgagcgcacggcggtcagcttccgtctgggt
gacgaagtgcgtgtccgcgtggtgcgtgtcgatctggaagaccgaaaaatcgatcttgag
ctggtaagcacccccaggcgccggaaggcagaccgcgatgcgctggaagtgtccaagcgc
gagccgcggggcaagggcaagggtggtcgctccggtaaagggcaaaaatccggtaagccg
gccagcgccaaggaaaagctggccgcagaggctgcccgggaggcccggtccaaatcggcc
aaaggtaaaccgtcaggctcgggccgtaagcgcaagagtcgcaaataa
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