Marinobacter nauticus ATCC 49840: MARHY1426
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Entry
MARHY1426 CDS
T02083
Symbol
rne
Name
(GenBank) fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mhc
Marinobacter nauticus ATCC 49840
Pathway
mhc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MARHY1426 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhc03019
]
MARHY1426 (rne)
03009 Ribosome biogenesis [BR:
mhc03009
]
MARHY1426 (rne)
Enzymes [BR:
mhc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MARHY1426 (rne)
Messenger RNA biogenesis [BR:
mhc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MARHY1426 (rne)
Ribosome biogenesis [BR:
mhc03009
]
Prokaryotic type
rRNA processing factors
MARHY1426 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CCG94904
UniProt:
H8WBS0
LinkDB
All DBs
Position
complement(1483527..1486697)
Genome browser
AA seq
1056 aa
AA seq
DB search
MKRMLINATHPEELRVALVDGQRLFDLDIESSTREQKKANIYKGRITRVEPSLEAAFVDF
GAERHGFLPLKEISKEYFKKSPGQIEGKINIKDVVSEGQEVIVQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGDDRAQLKEAMNGVQVPKSMGIIVRTAGIGRTTEE
LQWDLDYLVQFWEAITQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDADNVYED
VLSFVRAVMPTFENKIKLYKDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALV
SIDINSSRATKGQDIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVE
QKMREALELDRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLA
LSIMRLIYEESSKEKTAEVRAMVPVSVATFLLNEKRKQLADIEARQGVAVVVAPVPNMET
PHFEILRLRQDETSPEHVSSHQVAQQYSEREEEAAVEVASAEKPVREQAAVKAIRPSAPA
PAPTAAAPTAAAEQEEGLFRKLGKKIACFFRGEEPEQEASRDTNRNRSEERRNQARQDRR
KSRVARDDQRSGGNRSGNDRRQGSQQNRGDDNRGRNRGGRGDDQNRGERGGQNRSNRDDR
SGDSKGNDNRRDNRKDSQGRGQNRNRPQRDQKGPQDNREQQESQKGSSNDKQGGDDKQRK
PRRQRNRDGSPAETPASTPAARKAERSEKHQKDTQPEKAADKTAAVDAKASEPHVDKAEQ
AAATTPETKTAPESRKPEQQEMAEKPETKTEQAEQKEAPSAEDKPEAKDESSRKEKSDGR
RGRSSGRQRKPRSADSAEKSGAAEDKGDKESLPAEAEQKQAAKPQRTEQVTATEAEQPAE
KASAEPAKAEDKEPVKAEAKAPRQAKADSPKASEPETGAASDQKAAEDKADKAPEQKAEA
AKTEPEVDTAPEKQAGSSSEKPADKPEQPAEPAKAEPAPASEKPAEQKEETQEASASEAI
PVTPGRAYNDPREVRKRQRAAEEAKKAEEAKQAGSN
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaatgcaactcatcccgaagagttgcgcgtcgcgctggttgac
ggccaacggctgttcgaccttgatatcgaatccagtacccgcgaacagaaaaaggccaac
atctacaagggccgcattacccgggtagaacccagccttgaagcggctttcgttgacttt
ggcgcagagcgccacggcttcctgcccctgaaggaaatctccaaagagtatttcaagaaa
tcgcccgggcagattgagggcaaaatcaacatcaaggatgttgtctctgaaggtcaggaa
gtaatcgttcaggtcgacaaggaagagcgtggcaacaaaggcgccgccctgaccaccttc
atctccctggctggccgttatctggtgctgatgccgaataatccccgtgcaggcggtatc
tcacgccggattgaaggcgatgaccgagcccagttgaaagaggccatgaacggtgtccag
gtgccgaagtccatgggcattattgtgcgtactgccggtattggccgcaccaccgaagag
ctccagtgggacctcgactacctggtacagttctgggaagccattacccaggcagctggc
gagcgcaaagcgcctttcctgatccaccaggaaagcaatgtcatcatccgcgctgtgcgc
gattacctccgccaggatatcggcgaagtcctgatcgatgccgataacgtttacgaagac
gtgttgagcttcgttcgggcggtcatgcccaccttcgagaacaagatcaagctgtacaag
gacgaaatccctctgttcagtcgttaccagatcgaaggccagatcgaaacggcgttccag
cgcgaagtgaaactgccctccggcggctcgattgtcatcgacccgaccgaagccctggtg
tccattgacatcaactcatcccgggccaccaagggtcaggatattgaagaaacggccctg
cagaccaaccttgaagcggccgaagaaatcgcgcggcaactacgcctgcgggatatgggc
ggcctgatcgttatcgacttcatcgacatgacgccagccaaacaccagcgggaagtcgag
cagaagatgcgtgaagcgctggaactcgacagggcccgcgttcaggttggcaagatctcg
cgtttcggcctgctggaaatgtcacgccagcgtctgcgtccctcactgggcgagacccgc
agcgaggtttgcccacgctgtgaaggccagggcaccatccggggtatcgaatctctggcg
ctgagcatcatgcgcctgatctacgaagaatcctccaaggagaagaccgcagaagtacga
gccatggtgccggtttctgtggccaccttcctgctgaacgaaaaacgcaagcagctggcc
gacattgaagcccgtcaaggcgtagcggttgtggtcgcacctgtgcccaacatggaaacg
ccgcacttcgagattctgcgcctgcgtcaggacgaaacctctccagagcatgtctccagc
catcaggtagctcaacagtacagcgagcgcgaggaagaggcagccgtagaagttgcaagt
gccgagaaaccggtgcgcgaacaggccgccgtgaaagctatccgcccctctgcgccagcc
ccagcaccgacagccgctgcgccaacggctgctgctgagcaggaagaaggcctgttccgc
aaactgggcaagaagatcgcgtgcttcttccggggcgaagaaccggagcaggaagccagc
cgcgacaccaaccgcaaccggagtgaagagcgtcggaaccaggcccgccaggatcgccgc
aaatcccgcgttgcccgcgatgaccaacgctccggcggcaaccgcagcggcaacgatcgc
cgccagggtagccagcagaaccgtggcgacgacaaccggggccgcaatcgtggtggccgt
ggtgacgatcagaatcgtggtgaacgcggtggccagaaccgttccaaccgggacgaccgc
tctggcgacagcaagggaaatgacaaccgccgggacaaccgcaaggactcacagggtcgc
ggccagaaccggaaccgcccccagcgtgaccagaaaggcccgcaggacaaccgggaacag
caggagtcccagaagggatcttccaacgacaagcagggcggtgacgacaagcaacgcaaa
ccacgccggcaacgtaaccgggacggctcccccgccgagactccggcatctacgccagca
gcacgcaaagcggaacgcagcgagaagcaccagaaagatacccagccggaaaaagcggct
gacaagactgctgctgtggacgctaaagccagtgagccgcacgtagataaagccgagcaa
gcggccgcaacaacgccggaaaccaaaactgcgccagagagccgcaagcctgaacaacag
gaaatggccgagaagccggagaccaaaaccgaacaggccgagcagaaagaggctccctca
gcagaagacaagcctgaagcaaaggatgagagcagccgcaaagagaagtctgacggccgc
agaggccgcagctccggccgccagcgcaagcctcgctctgcggatagcgctgaaaaatcc
ggtgctgccgaagacaagggtgacaaggagagcttgccggcagaagccgagcagaaacag
gccgccaagcctcaacgtaccgagcaggtcaccgcaacagaagccgagcagcctgcagaa
aaggccagcgccgagcctgccaaagccgaagacaaagaaccggtcaaggcagaggccaag
gcaccccggcaagccaaggctgactcaccgaaggcgtctgagccggaaaccggcgcggct
tctgatcagaaggctgccgaggataaagccgacaaggcgccggaacagaaagccgaggcc
gctaaaaccgagccggaagtagatacggcgcccgagaagcaggccggatccagcagcgaa
aaacccgctgacaaaccggagcagcctgcagagcccgcaaaagccgagccagctccggcc
agcgaaaagccagcggagcagaaagaagagactcaggaagccagtgcatcggaagctatc
ccggtgactccgggccgggcctataatgacccaagagaggtccgcaagcgccaacgcgcg
gccgaagaagccaaaaaggcagaagaggccaagcaggccgggagcaactga
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