Marinobacter nauticus ATCC 49840: MARHY2133
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Entry
MARHY2133 CDS
T02083
Symbol
topA
Name
(GenBank) DNA topoisomerase I, omega subunit
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mhc
Marinobacter nauticus ATCC 49840
Brite
KEGG Orthology (KO) [BR:
mhc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhc03032
]
MARHY2133 (topA)
03400 DNA repair and recombination proteins [BR:
mhc03400
]
MARHY2133 (topA)
Enzymes [BR:
mhc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MARHY2133 (topA)
DNA replication proteins [BR:
mhc03032
]
Prokaryotic type
DNA Topoisomerases
MARHY2133 (topA)
DNA repair and recombination proteins [BR:
mhc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MARHY2133 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF2399
Motif
Other DBs
NCBI-ProteinID:
CCG95608
LinkDB
All DBs
Position
complement(2177232..2179871)
Genome browser
AA seq
879 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGSDFIVKSSVGHIRDLPVSGSGSQSDPKERAKQAAATRK
MSPDEKAEHKKRKAREQLVARMGVDPDHDWSARYEILPGKEKVVSELKRLAKSADHIYLA
TDLDREGEAIAWHLQETIGGEPDKYRRVVFNEITKRAIQEAFKDPGNLDNNRVNAQQARR
FLDRVVGYMVSPLLWAKIARGLSAGRVQSVAVRLIVEREREIRKFVPEEFWQLHADLAAE
GTKDPVRFEVTRYNDKPYRPVNEVQSKEHVERLKAGGFKVAKREDKPTRSRPSAPFITST
LQQAASNRMGFSVKKTMMLAQRLYEAGFITYMRTDSTNLSQDAVSSCRDFVQKQFGERYL
PEKPRVYGSKEGAQEAHEAIRPTDVARRPTDITGLEKDAEKLYDLIWRQFIACQMADAEF
LSTSIVVANGDYELRTRGRIVKFDGFLKAAPQSTKKDEDVALPDIKVDQPLDLKKLDPTQ
HFTKPAPRYTEASLVKELEKQGIGRPSTYASIISTIQDRGYVKLQNRRFYAEKMGEIVTE
RLAESFPNLMDYDFTARLEDELDEIAEGEVQWKKVLNDFYAKFRNQLESAEKTDGGMRAN
TPTETDIPCPSCGRNMQIRVASTGVFLGCSGYSLPPKERCKTTINLVSGDEVVSADDDVE
GEGETRLLRKKRRCPKCGTAMDSYLIDEKRKLHVCGNNPDCSGYEVEEGTFRIKGYDGPT
LECDKCGSEMQLKTGRFGKYFGCTNSECKNTRKLLKNGEPAPPKMDPVPMPELKCDKVDD
TYVLRDGASGLFLAASKFPKNRETRPPLVMEIKPHRKEIDPKYDYLMDAPEKDPEGNPTV
IRYSRKSKEQYVMSEKDGKATGWSAWFENGRWVPRDKKK
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaagtctcgttattgtcgagtcgccagcgaaagcgaagaccatcaacaagtac
ctgggctcggattttatcgtgaagtccagtgttggccacatccgtgacctgcccgtaagt
ggcagcggcagccagtcagacccgaaagaacgggcgaaacaggcggcggccacgcgcaag
atgagcccggacgagaaagccgagcacaagaagcgtaaggcacgggagcaattggtagcc
cgcatgggtgttgatcccgaccatgactggagcgcccgttacgagattctgcccggcaag
gaaaaggtggtcagcgagctcaagcgtttggccaagtctgccgaccacatctatctggca
acggatttggatagagagggggaggcgattgcctggcaccttcaggagaccattggcggc
gagccggacaaataccgtcgtgtggtatttaatgagattaccaagcgggcgattcaggaa
gccttcaaggatccgggcaacctggataacaaccgggtgaacgctcagcaagcccgccgg
ttcctggaccgcgttgtgggttatatggtctcgccgctgttgtgggcaaagattgcccgc
ggtctgtctgcgggccgtgtgcaatccgtcgcagtaagactgattgtggaacgggagcgg
gagatccgtaagtttgtgccggaagagttctggcaattgcatgcagacctggctgcagaa
ggcaccaaagacccggtccggttcgaagtaacccgctataacgacaagccctaccgccct
gtcaacgaagttcagagcaaggagcacgttgagcggcttaaggctggcggcttcaaggtg
gccaagcgcgaagacaagccgacccgatcccgtccgtctgcaccctttattacctccacg
ctgcagcaggcggccagtaaccgcatgggtttcagcgtcaagaaaacgatgatgctggcc
cagcgattgtacgaggccggtttcattacctacatgcgtacggattccaccaatctgagc
caggatgccgtatccagctgtcgtgacttcgtccagaagcagtttggcgaacgttatctg
cctgagaagccgcgggtctatggcagcaaggagggcgcccaggaagctcacgaagcgatt
cgcccgaccgatgttgctcgcaggccaacggatattaccggcctggaaaaagacgcagag
aagctctacgacctgatctggcgccagtttattgcctgtcagatggcagatgccgaattc
ctgagtacgtctattgtggtggccaacggcgactacgagctgcgcacccggggtcgaatc
gtcaagtttgacggcttcctgaaggctgcgccgcagtccaccaagaaagatgaagacgtg
gcattgccagatatcaaggtggatcagcccctggatctcaagaaactggatccaacccag
cattttaccaagccggcgccccggtacaccgaagccagcctggtcaaagagctcgaaaag
caggggatcggccggccgtccacctatgcctccatcatttctactattcaggatcggggc
tacgtaaagcttcagaatcgccgcttctacgcggagaagatgggggagatagtgaccgag
cgactggcggaatccttcccgaatctgatggattacgattttaccgcgcgcctcgaagat
gagctggacgagatcgccgagggtgaggttcagtggaaaaaagtgctgaacgacttctat
gccaaattccgtaatcagctggaaagcgctgaaaagacggatggcggtatgcgcgcgaat
actcccacggaaaccgatataccgtgcccgagctgtggccggaatatgcagatccgggtg
gccagtaccggggtgttcctgggctgctccggctattcgctgccacccaaggagcgctgt
aagaccaccattaacctggtgtctggtgacgaagtggtgagcgctgacgacgacgtggaa
ggggaaggcgaaacccgactgctccggaaaaagcgccgctgtccgaaatgcggaacggcc
atggacagctacctgatcgacgagaagcgcaagctacacgtgtgtggtaacaatccggac
tgctcaggatacgaggttgaagagggtacgttccgtatcaaaggttacgatgggccgacg
ctggaatgtgacaagtgtggctccgagatgcagctcaagaccggccgattcggcaagtac
ttcggttgcaccaacagtgaatgcaagaacacccgtaagttgctgaaaaatggtgagccg
gcaccccctaaaatggacccggtgccgatgccagagctcaagtgcgataaggtggacgat
acctacgtactgcgtgatggggcgtccggcctgtttttggcagccagtaaattcccgaaa
aatcgggaaacgcggccgccattagtgatggaaatcaagccacaccgtaaggaaatcgat
ccgaaatatgattacctgatggatgcccctgaaaaggaccctgaaggcaatccgacggtg
atccgttacagccgaaaatcaaaagagcagtacgtcatgtcggagaaagacggcaaggcg
acggggtggtcagcgtggtttgaaaatggtcgctgggtcccgcgcgacaagaaaaagtaa
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