Marinobacter nauticus ATCC 49840: MARHY2316
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Entry
MARHY2316 CDS
T02083
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase, specific for 23S rRNA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
mhc
Marinobacter nauticus ATCC 49840
Brite
KEGG Orthology (KO) [BR:
mhc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mhc03009
]
MARHY2316 (dbpA)
Enzymes [BR:
mhc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MARHY2316 (dbpA)
Ribosome biogenesis [BR:
mhc03009
]
Prokaryotic type
rRNA helicases
MARHY2316 (dbpA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
AAA_19
CMS1
SBF_like
AAA_22
Flavi_DEAD
Ebola-like_HR1-HR2
Motif
Other DBs
NCBI-ProteinID:
CCG95790
LinkDB
All DBs
Position
complement(2356174..2357547)
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AA seq
457 aa
AA seq
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MSSFKALGLSAAMQANLDQLGYQQPTPVQAEAVPLALAGKDVIAMAQTGSGKTAAFGIPI
IETIDPRRFHVQSLVLCPTRELADQVAKALRELARAKDNVKVLTLCGGVPIGPQIGSLSH
GAHIVVGTPGRVDDHLRKGTLSLDGLKVLVLDEADRMLDMGFEEVVTSIVSQSPGGRQAL
LFSATWPPAIRKLSEQFQSKPEDVRVESKAAAITIEESFYEIQPDQRAAAVAALLSRFQP
VSSLVFCTTKRDCDELSDELGRLGFSALSLHGDLDQRERDSALVRFANQSCTVLVATDVA
ARGLDIKGLPLVINAEPARDPEVHTHRVGRTGRAGEQGHAVTLCTPRQGHKITRLETERG
EPVLWGDTEALLAEALRPVTPAMKTLCLAGGRKDKVRPGDVMGALTGEAGIPGAAVGKID
LFDFQCFVAVESRWAAQALARLEKGKVKGRKFRVRYA
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcttttaaagcgcttggtctttccgcggccatgcaggccaaccttgatcaattg
ggttaccagcaacccacgccggttcaggcagaggcagttccgcttgcgttggcgggcaag
gacgtgattgccatggcgcaaaccggcagcggcaagacagcggcgttcgggataccgatt
atcgagacgatcgatccgcgacgcttccatgttcagagtcttgttctttgtcccacccgg
gaactggcggatcaagtggctaaagcgttgcgagagttggcacgggccaaagataacgtg
aaggtgctgacgttgtgtggtggtgtgcctatcgggccccagatcgggtcgctcagccat
ggcgctcatatcgtcgtgggcacgcccggccgggtagatgaccacctgcgcaaaggtacg
ctttcgctggatggcttgaaagtgctggtgctggacgaggcggaccgcatgctggatatg
gggttcgaggaggtggtcaccagtatcgtctcccaatctcccggtggcaggcaggcgctg
ctgttctccgccacctggccgccggccatcagaaagctgagcgagcaattccagagcaag
ccggaagacgtgcgggtggaatcaaaagcggccgccatcaccattgaagaatccttttac
gaaatccagccggatcagcgggcggcggccgtggcagcactgctttcccgttttcagccg
gtgtcgtctctggtgttctgtaccaccaaacgggactgtgatgagctgtcggatgaactg
ggtcgtctcggcttttcggcgttgtcgctacacggcgatctggaccagcgcgaacgggac
agcgctctggttcgatttgccaaccagagttgtacggttctggtggctaccgatgtggcg
gcaagggggctcgacatcaaagggctaccactggtcatcaatgccgagcctgcgcgggat
cccgaggtgcatacccatcgggtgggccgtaccggccgggcaggcgagcaggggcatgcg
gttactctctgcactccgcgccagggccacaagattacacgcctggaaacggagcggggc
gagccggtgttgtggggcgataccgaagcgttgctggcggaggcgttgcgcccggttaca
ccggccatgaaaacgctgtgcctggctggcggtcgcaaagacaaagtgcgccctggcgac
gtgatgggagctcttaccggcgaggccggtattcccggcgctgccgttggcaaaatcgat
ctgttcgactttcagtgcttcgtggcggttgaatcccgatgggcggcccaggcgctggcg
cggctggagaaaggcaaggtgaaaggtcggaaattccgggttagatatgcatga
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