Marinobacter nauticus ATCC 49840: MARHY3722
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Entry
MARHY3722 CDS
T02083
Symbol
rnb
Name
(GenBank) Exoribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mhc
Marinobacter nauticus ATCC 49840
Pathway
mhc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MARHY3722 (rnb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhc03019
]
MARHY3722 (rnb)
03016 Transfer RNA biogenesis [BR:
mhc03016
]
MARHY3722 (rnb)
Enzymes [BR:
mhc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MARHY3722 (rnb)
Messenger RNA biogenesis [BR:
mhc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MARHY3722 (rnb)
Transfer RNA biogenesis [BR:
mhc03016
]
Prokaryotic type
tRNA degradation factors
MARHY3722 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
IFT20
Rrp44_S1
Emfourin
Motif
Other DBs
NCBI-ProteinID:
CCG97176
LinkDB
All DBs
Position
3849221..3851203
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AA seq
660 aa
AA seq
DB search
MLNADALNQLRQLKTDIKQNKVVFPGTVKSTNGRFGFVALDEGRDVFLPPEEMQKVLPGD
RVNVTEHEVEKGKTQGVVDELLESHLTTFVGRYLIKGKGHFVAPETPGINRWIFIPPKER
KDAQPDDFIYCQIHRHPIKDGKGQAKVLRVIGKAGEPGIERAFTLANFDLADAWPEEVQK
QADTLTEESVTSHREGREDRTEQPYVTIDSPGTQDMDDALMATPNATGWTLSIAIADPTA
MIEPGSPAEEEAFNRATAIYFPGEPLPMLPDAISTRLCSLMPEVPRLALVCDLQVNNDGS
LGDYSFRQAVIRSQGKLSYELVSHLIEGREDDDIKALPEAVANSLDQLHQAATALRKWRS
EHALLSNDRPEFRLRLDENKRIRVIEPAVQNEAHRLVEECMVAANRCAADFLQKQGQGLF
IQHPGLRDDRADNIRKLLEGYAPHLAELDATSAEGFKALMKHTDGLQADVPVKSILSRQL
ARAELGFEPAPHQGMGLAAYTTFTSPLRKFSDFYVHRLIKAALWDQPIKALNPQQLESLQ
TTQFRARMAANTLEAWLKSDYAKGLPADPMEGTITRTMPSGFFVRLDCNGLEGFVSCKDL
EGKFSFDPVTLRLVHNKNGRIFQLDQRVTVSFSGVDEERRQINFKLLEAEDINPGTDDKG
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacgccgacgctctcaatcagttgcgccagctgaaaaccgacatcaaacagaac
aaggtggtcttccccggtaccgtcaagtccaccaacggtcgtttcggctttgtggccctg
gatgaagggcgggatgtgtttctgcctcccgaggaaatgcagaaagtcctgcccggtgat
cgggtcaatgtcaccgaacacgaagtggaaaaaggcaagacccagggcgttgtcgacgag
ctgctggaatcgcacctgaccaccttcgtgggtcgctatctgatcaagggcaaaggccac
ttcgtggcaccggaaaccccgggcattaaccgctggatttttattccgccgaaagaacgc
aaggacgcccagcccgacgacttcatctactgccagattcaccgccatccgatcaaggac
ggcaagggccaggcgaaggtgctgcgggtgatcggcaaggccggtgagccgggcatcgaa
cgggccttcaccctggccaacttcgatttggccgatgcctggccggaagaagtgcagaag
caggccgacacccttactgaggaatccgttacctcacaccgcgagggccgggaagaccgt
accgaacagccctacgtgaccatcgacagtcccggcacccaggatatggacgatgccctg
atggccaccccgaatgccactggctggaccctgtccatcgccatcgccgacccgaccgca
atgatcgagccgggcagcccggccgaagaagaagcctttaaccgcgccaccgccatctat
ttcccgggtgagcctctgccgatgttaccggacgccatcagcacccgcctgtgctcgctg
atgccagaggtaccccggttggccctggtgtgcgacctgcaggtgaacaacgatggcagc
ctgggcgactacagttttcgccaggccgtcatccgctcccagggcaagctgagctatgag
ctggtgtcacacctgattgaaggtcgggaagacgatgacatcaaggccttgcccgaagcc
gtcgccaacagcctggaccagctgcatcaggccgccactgccctgcgcaaatggcgctcg
gagcacgcgttactgagcaatgatcgccccgaattccggttgcgtctggacgaaaacaag
cggatccgggtgattgaaccggcagtgcagaacgaagcccaccggctggtggaagaatgc
atggttgcggccaatcgttgtgcggccgatttcctgcaaaagcaggggcaaggcctgttc
atccagcatccggggctgcgggacgaccgcgccgacaatatccgtaaactgctggaaggt
tacgccccacatctggccgaactggatgccaccagtgccgaaggcttcaaggcgttgatg
aaacacaccgatggcctgcaggccgatgtgccggtcaagtccattctctcgcgccaactg
gcccgggccgaactgggcttcgagcctgctccgcatcagggtatgggactggcggcctac
accacctttacttcaccgctgcgcaagttctcggacttctacgtgcaccgtctgatcaag
gccgcactctgggatcaacccatcaaggccctgaacccgcagcagctggagagtcttcaa
accacccagttccgcgcccgcatggctgccaacaccctggaggcctggctcaagagcgat
tacgccaaaggcctgccggcagatcctatggaaggcaccattacccgcaccatgccgtcg
gggtttttcgtccgcctggattgcaacggcctggaaggctttgtcagttgcaaggatctg
gagggcaagttcagctttgatccggttacgctgcgcctggttcacaacaagaacggacgg
atcttccagctggaccagcgggtaaccgtgagtttttccggtgtggacgaagagcgtcgg
cagatcaacttcaaactgctcgaggccgaggacattaatcccggaaccgacgacaagggt
tga
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