Marinobacter nauticus ATCC 49840: MARHY3753
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Entry
MARHY3753 CDS
T02083
Symbol
rhlE
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mhc
Marinobacter nauticus ATCC 49840
Pathway
mhc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MARHY3753 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhc03019
]
MARHY3753 (rhlE)
Enzymes [BR:
mhc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MARHY3753 (rhlE)
Messenger RNA biogenesis [BR:
mhc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MARHY3753 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
DUF8086
CMS1
AAA_22
Utp25_C
Sacchrp_dh_NADP
HEM4
Motif
Other DBs
NCBI-ProteinID:
CCG97207
LinkDB
All DBs
Position
complement(3881262..3882593)
Genome browser
AA seq
443 aa
AA seq
DB search
MSFSSLGLSEQLVRATADQGYETPSPIQQQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL
QRLAENPRTGKGPRALILTPTRELAAQVHDSVNLYSKYVPTKAAVVFGGVKINPQMMKLR
KGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQN
LLFSATFCNEIRTLAQGLLDNPVQVEVAARNTTAEKVKQSVYPVDQSQKTALLSKLVRDN
DWDQVLVFTRTKHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVLVATD
IAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKLLAGIEKL
IKKQLPRKEVEGFEPKNNLPLKPKAKADPSKARNRRPQGGNGKSFGPKPTGRSGGRGRGG
QGEGQGRGQGQGRSGRPAQRQSA
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcttctctcggtttgtccgagcagctggtccgtgccaccgccgatcagggt
tatgaaaccccgtctcccatccagcagcaggcgattcctgcggtgctgtctggcaaagat
gtaatggccgcggcccagaccggcaccggtaaaaccgctggttttaccctgcctttgttg
cagcgcctggcggaaaatccccgcactggcaaaggcccccgcgccctgattctcacacct
acccgtgagctggccgcccaggtacacgatagcgtgaacctttacagcaaatacgtaccc
accaaggccgctgtggtttttggtggtgtaaagatcaacccgcagatgatgaagctgcgc
aagggcctggacgtactggtggccacaccgggccgtttgatggacctgtaccagcagaac
gcggtgcgcttcaacgaagtggaaatcctggtgctggacgaagccgaccgcatgctcgac
atgggctttatccgcgatattcgcaagatcctggcgttgctgccggccaagcgccagaac
ctgctgttctccgccaccttctgcaacgaaatccgtaccctggcccagggcctgctggat
aacccggtgcaggtggaagtggcggcccgtaacaccaccgccgagaaagtgaagcagtcc
gtttacccggttgaccagagccagaagacagccttgctgagcaagctggtgcgtgacaac
gactgggatcaggtactggttttcacccgtaccaagcacggcgccaaccgcctgacccag
aagctggagaaagacggtatcacggctgccgccattcacggcaataagtcccagggtgcc
cgtacccgtgccctggcggatttcaaagccggtgaagtgcgcgtactggtcgccaccgac
attgctgcccgtggcctggatatcaaacagctgccgcaagtggtgaactttgaactgccg
aacgtgccggaagattacgtgcaccgcattggtcgtaccggccgtgccggtgaaagtggc
catgccctgtcactggtcagtgctgacgaaggcaagctgctggcgggtatcgagaagctg
atcaagaagcagcttccgcgcaaggaagtggaaggcttcgagccgaaaaacaacctgccg
ctgaagcccaaggccaaagcagacccgagcaaggcgcggaatcgtcgccctcagggtggc
aatggtaagagctttggcccgaagccgactggtcgtagcggcggtcgtggccgtggtggt
cagggcgaaggacagggccgtggccaggggcagggtagaagtggtcgcccggctcaacgc
cagagcgcctga
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