Marinithermus hydrothermalis: Marky_0194
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Entry
Marky_0194 CDS
T01457
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mhd
Marinithermus hydrothermalis
Brite
KEGG Orthology (KO) [BR:
mhd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mhd03016
]
Marky_0194
Enzymes [BR:
mhd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Marky_0194
Transfer RNA biogenesis [BR:
mhd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Marky_0194
Prokaryotic type
tRNA splicing ligases
Marky_0194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AEB10955
UniProt:
F2NNB4
LinkDB
All DBs
Position
195920..197359
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AA seq
479 aa
AA seq
DB search
MDNVPFERLDRYTYRIPRHGKMWVDAVFYANDEILAQLEAEGYASLKQLVNVATLPGIVG
PALAMPDIHWGYGFPIGGVAAFDPTAGGVVSPGGVGFDINCGVRLLTTRLTREDLEPRKT
RLADALYRRVPAGVGSARRDVRWSPKDLKTVLREGARALVAQGFGEAADLERIESGGRLP
LADPDRVSARALERGGPQLGTLGSGNHFLEVQYVDEVYDPEAAEAYGLWVGQVTVLIHTG
SRGLGHQVCQDYVERFLQAARRYGIELVDRQLAAAPIESPEGQDYLHAMAAAANFAFANR
QLITHNVRLAFEDAGFLPRDHQLRVLYDLAHNNAKFEEYAGRRVLVHRKGATRAFGPGAP
DVPPAFRTVGQPVLVPGDMGRYSFVLAGTPGAMTRTFGSSCHGAGRQMSRHKAKKAARKR
NLIAELEAQGILVRAASRATVDEEMPEAYKDVASVVDVVHGAGIGKKVARLRPLIVVKG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggacaacgtgccgttcgaacgcctggaccgctacacctaccgcatcccccgccacggc
aagatgtgggtggacgcggtgttctacgccaacgacgagattctcgcgcagctcgaggct
gaagggtacgcctccctaaagcaactcgtgaacgtcgcgaccctacccgggatcgtcggg
ccggccctcgccatgccggacatccactgggggtacggcttccccatcgggggcgtggcg
gccttcgaccccacggcgggcggcgtggtcagtcccggcggggtggggttcgacatcaac
tgcggcgtgcgcctcctcaccacgcgcctcacgcgggaggacctcgagccccgaaaaacc
cggctcgcggacgccctgtaccggcgggtcccggcgggcgtaggctcagcgcggcgggac
gtgcgctggagccccaaggacctcaagaccgtgctgcgcgaaggcgcgcgggccctcgtc
gcgcaagggttcggggaggcggcggacctcgagcgcatcgagtccggggggcggctgccc
ctcgcggacccggaccgcgtgagcgcccgcgccttggagcggggcgggccgcagctcggc
acgctcggctcggggaaccacttcctcgaggtgcagtacgtggacgaggtgtacgacccc
gaggccgcggaggcctacgggctttgggtggggcaggtcaccgtcctgatccacaccggc
tcgcgcggcctggggcaccaggtctgccaggattacgtggagcgcttcctgcaagccgcc
cggcgctacgggatcgagctcgtggaccggcagctcgccgccgcgcccatcgagagcccc
gaagggcaggactacctgcacgcgatggccgccgcggcgaacttcgcgttcgcgaaccgg
cagctcatcacgcacaacgtgcgcctggccttcgaggatgccggcttcctcccgcgggac
caccagctgcgcgtcctgtacgacctcgcgcacaacaacgccaagttcgaggagtacgcg
ggccggcgggtcctggtgcaccgcaagggcgccacgcgcgctttcgggcccggcgcgccg
gacgtaccgcccgccttccgcacggtggggcagcccgtcctcgtgccgggggacatgggg
cggtactccttcgtcctcgcgggcacccccggcgcgatgacgcgcaccttcggctcgagc
tgccacggcgcgggccgccagatgagccgacacaaggcgaagaaagccgcgcggaaacgc
aacctgatcgcggagctcgaggcgcagggcatcctggtgcgcgccgcgagccgcgccacg
gtggacgaggagatgcccgaggcgtacaaggacgtggccagcgtggtggacgtggtgcac
ggcgcggggatcgggaaaaaagtcgcgcggctccggcccctcatcgtggtcaaggggtag
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