Marinithermus hydrothermalis: Marky_1230
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Entry
Marky_1230 CDS
T01457
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mhd
Marinithermus hydrothermalis
Pathway
mhd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Marky_1230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhd03021
]
Marky_1230
03019 Messenger RNA biogenesis [BR:
mhd03019
]
Marky_1230
Transcription machinery [BR:
mhd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Marky_1230
Messenger RNA biogenesis [BR:
mhd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Marky_1230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
AAA_22
NACHT
Spore_III_AA
AAA_24
ATPase_2
ARMH5
Motif
Other DBs
NCBI-ProteinID:
AEB11970
UniProt:
F2NQN2
LinkDB
All DBs
Position
complement(1217623..1218903)
Genome browser
AA seq
426 aa
AA seq
DB search
MSRKKTPTPTAMNYQELANKILPELHLIAAKVGIDGYKKLRKDELIMAILEHQAQDEGLI
LAKGYLEISSDGYGFLQEDVYNLDSRSVIVSAGLIKQFQLRSGDYIVGKARPPRENERYG
TLIRVEAVNGVDPQAAQKRPKFDELIPQFPDRQIKLETTPDELATRVIDLLAPIGRGQRG
LIVAPPKAGKTTLLKKVANAVLQNEPDIKVIVLLIDERPEEVTDFRESVEGAEVIASTFD
EPPQNHIRVAEFVHERARRIVEEGGHVMILLDSITRLARANNLVTPPTGRTLSGGLDSAA
LHFPKRFLGAARNIRGGGSLTILATALVETGSRMDDVIFEEFKGTGNMELHLSRRLEERR
IFPAIDILKSGTRREELLLGQEVIHKMWLLRKVLADMDPAEAMEMLLGRLSRTKSNKEFL
ATLAAK
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgagccggaagaaaacccccaccccgaccgccatgaactaccaagaactcgcgaacaag
atcctgcccgagctccacctgatcgccgcgaaggtgggcatcgacgggtacaagaagctc
cgcaaggatgagctcatcatggccatcctggagcaccaagcgcaggacgagggcctgatc
ctcgccaaggggtacctcgagatcagctcggacgggtacggcttcctccaggaggacgtg
tacaacctggactcgcgcagcgtgatcgtttccgccgggctgatcaagcagttccagctg
cgcagcggggattacatcgtgggtaaggcccgccccccgcgggagaacgagcggtacggc
accctgatccgcgtggaggccgtgaacggcgtggacccgcaggccgcgcagaaacgcccc
aagttcgacgagctcatcccgcagttccccgaccgacagatcaagctcgagaccaccccg
gacgagctcgctacccgcgtgatcgacctgctcgctccgatcgggcgcgggcagcgcggc
ttgatcgtcgcgcctcccaaggctggtaagaccaccctcctcaagaaggtcgcgaacgcg
gtgctgcaaaacgagcccgacatcaaggtgatcgtgctgttgatcgacgagcggcccgag
gaggttacggacttccgggagtcggtcgagggcgcggaggtgatcgcctcgaccttcgac
gagcccccgcaaaaccacatccgcgtggcggagttcgtgcacgaacgcgcccgccggatc
gtggaggagggtgggcacgtgatgattttgctggactcgatcacgcgcctggcccgcgcg
aacaacctggtcacccccccgaccggccggaccctctcgggtgggttggactcggcggcg
ctgcacttccccaagcgtttcctgggcgcggcccgcaacatccgcgggggcggcagcctc
accatcctcgccacggccctggtggagacgggcagccgcatggatgacgtgatcttcgag
gagttcaagggcacgggcaacatggagcttcacctgagccggcggctcgaggagcgccgg
atcttccccgcgatcgacatcctcaagtcgggcacccgccgggaggagttgctgctcggg
caggaggtcatccacaagatgtggctgctccgcaaggtcctcgcggacatggacccggcc
gaggcgatggagatgctcttgggacggctttcccgcacgaagagcaacaaagagttcctg
gccacactagcggcgaaatag
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