Mycobacterium heckeshornense: JMUB5695_03180
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Entry
JMUB5695_03180 CDS
T07325
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mhek
Mycobacterium heckeshornense
Pathway
mhek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JMUB5695_03180 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhek03019
]
JMUB5695_03180 (rnj)
Messenger RNA biogenesis [BR:
mhek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JMUB5695_03180 (rnj)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BCQ09730
LinkDB
All DBs
Position
complement(3276432..3278108)
Genome browser
AA seq
558 aa
AA seq
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MNDELGPPGPLAPGGLRVTALGGISEIGRNMTVFEHLGRLLIIDCGVMFPTHDEPGVDLI
LPDLRHIEGRLDDVEALVLTHAHEDHIGAIPFLLKLRPDIPVVGSKFTLALVAAKCREHR
LKPVFVEVSEGQHTTHGVFECEYFAVNHSIPDSLAIAVYTGAGTVLHTGDIKLDQLPLDG
RPTDLPGMSRLGDAGVDLFLCDSTNSEIPGVGPSESEVGPTLHRLIRGADGRVIVACFAS
NVDRVQQIIDAAVALGRRVSFVGRSMVRNMGIARELGYLRVADSDLIDISVAETMRPEQV
VLITTGTQGEPMSALARMSRGEHRSITLTAGDLIVLSSSLIPGNEEAVYGVIDELSKIGA
RVVTNAQARVHVSGHAYAGELLFLYNGVRPRNVMPIHGTWRMLRANAALAARTGVPPESI
LLAENGVSVDLVAGKARIAGAVPVGKMFVDGLVTGDVGEITLGERLILSSGFIAATVVVR
RGTGRAVAPPHLLSRGFSEDPKALEPAVRKVEDELELLAKENVTDPIRIAQAVRRTVGKW
VGETYRRQPMIVPTVLEI
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgacgagctcggcccgccaggtcctctcgcccctggcggactgcgggtcaccgcg
ctgggcggcatcagtgaaatcggccgcaacatgacggttttcgagcatttgggtcggcta
ctgatcatcgactgcggggtcatgttccccactcacgacgaacccggtgtcgacctgatc
ctgccggacctgcggcatatcgaaggccggctcgacgacgtcgaggcgttggtgctcacc
cacgcgcacgaggaccacatcggagccattccgttcctgctcaagctgcggcccgacatc
ccggtggtcggctcgaagttcacgctggcgctggtagcggcgaaatgccgtgagcaccgg
ctcaaaccggttttcgtggaggttagcgaaggccagcacaccacccatggcgtattcgag
tgcgaatacttcgccgtcaaccattccattcccgactcgctggccatcgcggtgtacacc
ggggcgggaaccgtcctgcacaccggcgacatcaaactcgaccagcttccgctcgacggc
cgtcccaccgacctgcccgggatgtcgcggctgggcgatgccggcgtggaccttttcctg
tgcgactcgaccaactccgagatacccggcgtcggaccgtcggaaagcgaggttggtccg
accctgcaccggttgatcagaggcgccgacggccgggtcatcgtggcgtgcttcgcctcc
aacgtcgaccgggtgcagcagatcatcgacgccgcagtcgcgttgggccgacgggtgtcg
ttcgtaggccgttcgatggtgcgcaacatgggcatcgcccgtgaactcggctacctgcgg
gtggccgactccgatctgatcgacatcagcgtggccgaaacgatgcggcccgagcaggtc
gtgttgatcacgaccggcacgcagggcgagccgatgtcggcgctggcccgcatgtcgcgc
ggcgagcaccgcagtatcacgctgaccgccggtgacctcatcgtgttgtcgtcatcgttg
atacctggcaacgaggaagccgtctacggcgtcattgacgaactctccaagatcggcgcc
cgcgtggtcaccaatgctcaagcgcgggtgcatgtttcgggtcacgcgtatgccggcgag
ctgctgttcctctacaacggggtgcgaccgcgcaatgtgatgccgatccacggcacctgg
cggatgctgcgcgccaacgccgccctggccgcccgcacgggggtgccgccggagtcgatt
ctgttggccgagaacggtgtcagcgtcgaccttgttgccggtaaggcccgcatcgcggga
gctgtgccggtcggcaagatgttcgtcgacggtcttgtcacgggcgacgtcggcgagatc
actctgggtgaacggctgatcttgtcgtcggggttcattgcggcaactgtggtggtgcga
cgcggcaccgggcgtgcggtggcgccaccgcatctgctctcgcgcggtttttccgaagat
cccaaggcactggagcccgcggtgcgcaaggtcgaagacgagctggagttgctcgccaag
gagaacgtcaccgacccgatccggatcgcccaggcggtgcgccggaccgtcggcaaatgg
gtgggggaaacctaccggcgccagccgatgatcgtgccgaccgtgctggagatctga
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