Mycobacterium heckeshornense: JMUB5695_03928
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Entry
JMUB5695_03928 CDS
T07325
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mhek
Mycobacterium heckeshornense
Pathway
mhek03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mhek00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JMUB5695_03928 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhek03021
]
JMUB5695_03928 (rpoC)
03400 DNA repair and recombination proteins [BR:
mhek03400
]
JMUB5695_03928 (rpoC)
Enzymes [BR:
mhek01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JMUB5695_03928 (rpoC)
Transcription machinery [BR:
mhek03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JMUB5695_03928 (rpoC)
DNA repair and recombination proteins [BR:
mhek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JMUB5695_03928 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BCQ10473
LinkDB
All DBs
Position
complement(4028868..4032818)
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITDVDEELRHNELSTLEAEMATERKQIEDQRDAELEARAQKLEAD
LAQLEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLQEIWDTFTKLAPKQLIVDENL
YRELVDRYGEYFTGAMGAEAIQKLIENFDIDAEAEALREVIRNGKGQKKLRALKRLKVVA
AFQQSSNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ
PATKDSPERGVYSSPAEAIMAMDRGALSVRAKIKVRLSQLRPPIEIEDELFGRNGWRPGD
SWMAETTLGRVMFNELLPMGYPYVNKQMHKKVQATIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPNKQEILDAYEERADKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGQALREHYPDDNPIITIVESGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREADCGTERGITVE
LAERQPDGTLIRDPFIETSAYARTLGVDAVDKDGNVIVERGRDLGDPEIEALLAAGITSV
KVRSVLTCATGMGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDIVSGLPRVQELFEARIPRGKAPIADVSGRVRLEEGDRFYKITIVPDDGGEEVVYDKL
SKRQRLRVFKHEDGSERVLADGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVKEVQQ
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGIARYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgagctccgcatcggcctggccaccgcggacgatatc
cggcaatggtcttacggcgaggtcaagaagccggagaccatcaactaccgcacgctgaag
ccggagaaggacgggctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaaatacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgcggagtg
gaggtcacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgcaccc
gtcacccacatctggtacttcaagggcgtgccttcgcggctggggtatttgctcgatttg
gcgccgaaggatctggagaagatcatctacttcgcggcgtatgtcatcaccgacgtcgac
gaggagctgcgccacaacgagctgtccacgctcgaggccgagatggccaccgagcgcaag
cagatcgaggaccagcgtgacgccgagctggaggcgcgcgcccagaagctggaagccgac
ctggcccagttggaggccgagggcgccaaagccgatgcccggcgcaaggttcgcgacggc
ggcgagcgggagatgcgccagatccgcgaccgggcgcagcgtgagctggaccggctgcag
gagatctgggacaccttcaccaagctggcccccaagcagctgatcgtcgacgagaacctc
taccgcgagctggtcgaccgctacggcgagtacttcaccggcgccatgggtgcggaggcg
atccagaaactcatcgagaacttcgacatcgacgccgaggccgaggcgctgcgcgaagtt
atccgaaacgggaaggggcagaagaagcttcgcgctctcaaacggctgaaggtggtggct
gcgttccagcagtcgtcgaactcgccgatgggcatggtgcttgacgccgtcccggtaatc
ccgccggaactccgcccgatggtgcagctcgacggcggccggttcgctacgtcggatctc
aacgacctgtatcggcgggtgatcaaccgcaacaaccggctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtggacgcg
ctgttcgacaacggccgccggggtcgcccggtcaccgggccgggcaaccgtccgctgaag
tcgctctcggatctgctcaagggcaagcagggccggttccgccagaatctgctcggcaag
cgggtcgactactcgggccgctcggtgatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcaaaacatcaagagcgccaagcggatggtggagcgtcagcgt
ccgcaggtgtgggatgtgctcgaggaggtcatcgctgagcacccggtgctgctgaaccgc
gcaccaaccctgcaccgcctcggcatccaggccttcgagccaatgctgatcgaaggcaag
gcgattcagctgcacccgttggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccattgagcgccgaggcacaggccgaggcccggatcttgatgctg
tcctccaacaacatcctgtcgccggcgtcggggcgtccgctggccatgccgcggctggac
atggtcaccgggttgtactacctgaccaccgaggtgcccggcgacaccggtgaataccag
ccggccaccaaggactcgcccgagcggggcgtgtacagctcgccggccgaggcgatcatg
gcgatggaccgcggcgctttgagcgtgcgggccaaaatcaaggtgcggttgagccagctg
cgcccgcccatcgaaatcgaggacgagctgttcggccgaaacggttggcgcccaggggat
tcctggatggcggagaccacgctgggccgggtgatgttcaacgaactgttgccgatgggt
tacccctacgtcaacaagcagatgcacaagaaggtgcaggccaccatcatcaacgatctc
gccgagcgctacccgatgatcgtggtcgcccagaccgtcgacaagctaaaagacgccggt
ttctactgggccacccgctcgggtgtcacggtgtcgatggccgacgtgctggtgccgccg
aacaagcaggagatcctcgacgcctacgaggagcgggccgacaaggtcgaaaagcagttc
cagcgtggtgctttgaaccacgacgagcgcaacgaggcgctggtggaaatctggaaggaa
gccaccgacgaggtgggtcaggcgctgcgcgagcactacccggacgacaatccgatcatc
acgatcgtggaatccggtgccacgggtaacttcacccagacccgcacactcgcggggatg
aaggggttggtgaccaacccgaagggggagttcattccgcgcccgatcaagtcgtcgttc
cgcgagggcctgaccgtgttggagtacttcatcaacacccacggcgcgcggaaaggcctg
gccgacaccgcattacgtaccgccgactccggttacctgacccgccggctggtggacgtt
tcgcaggacgtcatcgtccgcgaggcggactgcggcaccgaacgcggcatcacggtcgag
ctggccgagcgtcagcccgacggcacgctcatccgcgacccgttcatcgagacgtccgcg
tacgcacgcacattgggcgtcgacgcggtcgacaaggacggcaacgtcatcgtcgaacgc
ggtcgcgacctgggcgatccggagatcgaggcactgctggcggcgggcatcacctcggtg
aaggtgcgctcggtgctgacctgtgcgaccggcatgggtgtgtgcgcgacctgctacggg
cggtccatggccaccggcaagctcgtcgacatcggcgaagctgtcggcatcgtggccgcg
cagtccatcggggagccgggtacacagctgaccatgcgcacgttccaccagggtggtgtc
ggtgaggacatcgtcagcggtctgccgcgggtgcaggagctgttcgaggcccgcatcccg
cgcggcaaggcgccgatcgccgacgtcagcggacgggtgcgactcgaggagggcgaccgc
ttctacaagatcaccatcgttcccgacgacggtggcgaggaagtggtctacgacaagctt
tccaagcgccagcggctgcgggtcttcaagcacgaggacggcagcgaacgggtgctcgcc
gacggcgaccacgtcgaggtgggccagcagctgatggaaggctccgccgacccgcacgag
gtgctgcgggtgcagggtccgcgcgaggtgcagatccatctcgtcaaggaggtccagcag
gtctaccgggcccagggcgtgtcgatccacgacaagcacatcgaggtgatcgtgcgccag
atgctgcgccgggtgacgatcatcgactcggggtcgacggagttcttgccgggttcgctg
atcgaccgggccgagttcgaggccgagaaccgtcgggtggtggccgagggcggcgagccc
gccgccggtcgtccggtgttgatggggatcaccaaggcgtcgctggccaccgactcgtgg
ctctccgcggcgtcgttccaggagaccacgcgagtgctgaccgatgcggcgatcaactgc
cgcagcgacaagctcaacggtctgaaggagaacgtgatcatcggcaagctgatcccggcc
ggtaccgggatcgcccgctaccgcaatatccaggtgcagccgaccgaggaggcccgggcc
gcggcgtacacgatcccgtcctacgaggaccagtactacagcccggacttcggccaggcc
accggtgccgcggtgccgctggacgactacggctacagcgactaccgctag
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