Mycolicibacter heraklionensis: K3U94_05390
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Entry
K3U94_05390 CDS
T07612
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mher
Mycolicibacter heraklionensis
Pathway
mher03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mher00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K3U94_05390 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mher03400
]
K3U94_05390 (mfd)
Enzymes [BR:
mher01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K3U94_05390 (mfd)
DNA repair and recombination proteins [BR:
mher03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K3U94_05390 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QZA08722
UniProt:
A0A9X7ZHL3
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All DBs
Position
1124329..1127964
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AA seq
1211 aa
AA seq
DB search
MTAPGYQTVQNPIAGLVDLALGAPAFAELIERAGDPPAELALVGPVGARPFTAAALARSS
ALLVVTATGHEADDLTAELRGVYGDTVALFPSWETLPHERLSPGVDTVGARLLLLRRLAR
PDDARLGPPLRVVVTTARSLLQPMTGQLDAIEPVMLAVGDEIPFEAVIARLVELAYTRVD
LVGKRGEFAVRGGILDLFPPTAEHPVRVEFWGDEATEIRPFSVADQRSIPEVEVGTVVAV
PCRELLLTDEVRARAAELARDQPHADNAVLGTVGDMLAKLAEGIPVDGMEALGPVLRPGP
QALLTDQLPAGTPVLVCDPEKIRARAADLIKTGREFLEASWSTAAIGGEAPIDIEQLGGS
GFREFAQVRQAALDTGHPWWTLSQLPDPEAVELDVRASPSARGRQRDIDEIFAMLRAHIA
TGGRAAVVAPGVGTARRIVEQLAESETAATLLDAGAAPQPGVVGVLKGPLHEGLIIPGAN
LVVVTEADLTGNRVSGPEGKRLAAKRRNAVDPLALTAGDLVVHDQHGIGKFVEMTERTVG
GARREYLVLEYASGKRGANGTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAQTKTKA
RKAVREIADELVALYAKRQAAPGHAFAPDSPWQAEMEDAFGFTETVDQLTAISEVKADME
KPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFSTRMAGFP
VTVKGLSRFTDARESKATIDGLADGSVDVVIGTHRLLQTGVRWKDLGLVIVDEEQRFGVE
HKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEDRYPVLTYVGPHDEKQ
VAAALRRELLRDGQVFYVHNRVSSIDAAAARVRALVPEARVVVAHGQMPEEMLETTVQGF
WNREYDILVCTTIIETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYP
RESPLTETAHDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDLYVR
LVGEAVEAYRAAFNGETITTEEVKDVRIDLPVDAHLPPEYINSDRLRLEAYRRLAAAPDD
AAINAVIDELTDRYGPLPEPAGRLVAVARLRLLCRAAGITEVSAASATTLRLAPMTLPDS
AQLRLKRMHPSASYRATTATVQVPIPRAGGGVGAPRIRDVELVQMVADLISALDGKPQGL
IDVTGAAPAVR
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggtaccagactgtccaaaacccgattgcgggcctcgtagacctggcg
ctgggcgcgcccgccttcgccgaactcatcgagcgcgccggcgacccgcccgccgaactc
gcgctggtgggcccggtcggagcgcgtccgttcaccgcggcagccctggcccgcagcagc
gcgctgctggtggtcaccgccaccggccacgaagccgacgacctgaccgcggagctgcgc
ggggtgtacggcgacacggtggcactgtttccgtcctgggagacgctgccgcacgagcgg
ctctcgcccggggtggacaccgtgggcgcccgcctgctgctgctgcgccggctggcccgc
cccgacgacgcccggctggggccgcccctgcgcgtggtggtgaccacggcccggtcgctg
ctgcagccgatgaccggccaactggacgcgatcgagccggtcatgctggccgtcggtgac
gagattccgttcgaggcggtgatcgcccggttggtcgagctggcctacacccgggtggac
ctggttggcaagcgcggcgagttcgcggtccgcggcgggatcctcgacctgttccccccg
accgccgagcatccggtgcgcgtcgagttctggggtgacgaggccaccgagatccggccg
ttctcggtggccgatcagcgctccatccccgaggtcgaggtcggcacagtggtcgcggtg
ccctgtcgggagctgctgctcaccgacgaggtccgggcgcgcgcggccgagctggcacgc
gatcagccgcacgccgacaacgccgtgttgggcaccgtcggcgacatgctggccaagctg
gccgagggcatcccggtcgacggcatggaggcgctgggcccggtgctgcggcccggcccg
caggcgctgctgaccgatcagctgcccgccggtaccccggtgctggtctgcgatccggag
aagatccgcgcccgcgccgccgacctgatcaagaccggacgcgaattcctggaggcgtcc
tggtcgacagcggcgatcggcggtgaggcgccgatcgacatcgagcagctcggcggatcg
ggattccgtgagttcgcccaagtgcgccaggcggcgctggacaccgggcatccgtggtgg
acgctgagccagctgcccgacccggaggcggtcgaactcgatgtgcgcgcgtcgccgtcg
gcacgggggcggcagcgcgacatcgacgagatcttcgccatgctgcgggcgcacatcgcg
accggggggcgtgccgcggtggtggcccccggcgtcggcacggcgcggcggatcgtggag
cagctggccgaatccgagactgcggcaacactgttggatgcgggtgccgcgccgcagccc
ggcgtggtcggggtgctgaagggcccgctgcacgagggtctgatcatcccgggcgccaac
ctggtggtggtgaccgaggccgatctgaccggcaaccgggtgagcgggccggaaggcaag
cggctggcagccaagcgccgcaacgccgtcgacccgttggcgctgaccgccggcgacctg
gtggtgcacgaccagcacggcatcggcaagttcgtggagatgaccgagcgcaccgtcggc
ggggcgcggcgcgaatacctggtgctcgagtatgcgtcgggcaaacgtggagccaacggg
accgacaagctctacgtgccgatggactccctggaccagctgtcccgctacgtcggcggc
caggccccggcgctgagccggctcggtggcagcgactgggcccagaccaagaccaaggcc
cgcaaggccgtccgcgagatcgccgacgaactcgtcgcgctctacgccaaacgccaggct
gcgcccggccacgcgttcgccccggacagcccgtggcaggccgagatggaggacgccttc
gggttcaccgagaccgtcgaccagctcaccgcgatcagcgaggtcaaggccgacatggaa
aagcccgtcccgatggaccgggtgatctgcggcgacgtcggctacggcaagaccgagatc
gcggtgcgagcggcgttcaaagccgtccaggacggcaagcaggtcgcggtgctggtgccc
accacgctgctggccgatcagcacctgcagacgttcagcacccggatggccggcttcccg
gtcaccgtcaaggggctgtcgcggttcaccgacgcccgagaatccaaggcgactatcgac
ggcctggccgacggctccgtggacgtggtgatcggcactcaccggctgctgcagaccggg
gtgcgctggaaggacctcggcctggtgatcgtcgacgaggaacagcggttcggcgtcgag
cacaaggagcacatcaaggccctgcgcacccacgtcgacgtgctcaccatgagcgccacg
ccgatcccgcgcaccctggagatgagcctggccggcatccgggagatgtcgacgatcctc
accccacccgaagaccgctatcccgtgctgacctacgtcggcccgcacgatgagaagcag
gtcgccgcggcattgcggcgcgagctgctgcgcgatggccaggtgttctacgtgcacaac
cgggtcagctccatcgacgcggccgccgcccgggtgcgtgcgctggtgcccgaggcccgg
gtcgtggtcgcgcacggccagatgcccgaggaaatgctggaaaccacggtgcagggcttc
tggaaccgggagtacgacattctggtgtgcaccacgatcatcgagaccggcctggacatc
tccaacgccaacacgttgatcgtggagcgtgccgacaccttcgggctctcccagctgcac
cagctgcggggccgggtgggccgcagccgggagcgcggctacgcctacttcctctatccg
cgggagagcccgctgaccgagaccgcccacgaccggttggccaccatcgcccagaacaac
gaactcggcgccgggatggcggtggcgatgaaggacctggagatccgcggcgccggcaac
gtgctgggggtggagcagtccgggcacgtcgccggggtgggcttcgacctgtatgtgcgg
ctggtcggcgaggccgtcgaggcctaccgggcggcgttcaacggcgagacgatcaccacc
gaggaggtcaaggacgtccggatcgacctgccggtcgacgcgcatctgccgccggagtac
atcaactccgaccggctgcggctggaggcctaccgacggctagccgctgcgcccgacgac
gccgcgatcaacgctgtcatcgatgagctgaccgatcgctacgggccgctgcccgagccg
gccgggcggttggtggcggtggcccggctgcggctgctgtgccgagcagccgggatcacc
gaggtgtcggcggcgtcggcgaccacgctgcggctggccccgatgacgttgccggactcc
gcccagttgcggctcaagcgaatgcatccgtcggccagttaccgcgccaccaccgccacc
gtgcaggtgccgatcccgcgggccggcggcggcgtcggcgcgccccgcatccgcgacgtc
gaactcgtccagatggtggccgatctgatttccgcgctggacggcaagccgcagggtctc
atcgacgtcaccggcgcggcgcccgcagtacggtaa
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