Mycolicibacter heraklionensis: K3U94_19965
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Entry
K3U94_19965 CDS
T07612
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mher
Mycolicibacter heraklionensis
Brite
KEGG Orthology (KO) [BR:
mher00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mher03019
]
K3U94_19965 (hrpA)
Enzymes [BR:
mher01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K3U94_19965 (hrpA)
Messenger RNA biogenesis [BR:
mher03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K3U94_19965 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND_NTPase5
NACHT
nSTAND3
T2SSE
ABC_tran
PhoH
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QZA07205
UniProt:
A0A9X7ZFU2
LinkDB
All DBs
Position
complement(4200050..4203973)
Genome browser
AA seq
1307 aa
AA seq
DB search
MLREVVEPSVAQLRTLLDELTVRDAVYFGRRLKDLRGAKPEQLRKLAQRMDEAQALVAAR
RAAVPDVRYPDLPVSSRRDEIAAAIRDHQVVVVAGETGSGKTTQLPKICLELGRGIRGTI
GHTQPRRLAARTVAQRIADELGSPLGDVVGYAVRFADRVSTRTCVKLMTDGILLAELERD
RRLLRYDTLIIDEAHERSLNIDFLLGYLRELLPRRPDLKVIITSATIEPQRFAAHFADGH
GGGAPIVEVSGRSYPVEIRYRPLELPVDSAAGDDPDDPDHEIIRTETRDEIEAIVDAVHE
LSAEPPGDILVFLSGEREIRDTAEALGGLVNTEVLPLYARLSTAEQQKVFAPARAGRRIV
LATNVAETSLTVPGIRYVIDPGNARISRYSRRLKVQRLPIEPISQASAAQRSGRCGRTAP
GVCIRLYSEADFDTRPRYTDPEVLRTNLAAVLLRMASLRLGAVEDFGFLDPPDSRSIRDG
VALLVELGAFNAQGAITDVGRRLARLPVDPRLGRMILAAETEGCVREMLVLVAALTIPDP
RERPVDREEAARAKHARFVDDDSDFTAYLNLWSYLSEQRKSLSGSAFRRMCRNEFLHYLR
IREWQDLVGQLRSIAADIGIRESGEPAQPAAIHAALLAGLLSHVGMRRDDGREFAGARNS
KFVLAPGSVLAKRPPRWTMVAELVETSRLFGRTAARIQPETVERVAADLVQRSYSEPHWD
AKRGEVMAFEKVTLYGLPLVARRRVGYARVEPAAARELFIRHALVEGDWATRHRFLADNA
ALRDQLQELEDRVRRRDLIVDDDTVYDLYEARIPAEVVSARHFDGWWKKQRQATPDLLTF
TRDELLRTDETLGADRPDNWATADLALPLTYRFEPGAADDGVTVHVPIDVLARLGGDEFA
WQVPALREELITALIRSLPKDLRRNFVPAPDTARAVLSAIGPEGEPLLEALVRELRRRTG
VLVPIDAFDLAKLPAHLRVTFAVEAADGTEVARGKDLGALQDRLATSAREAVADAVGAEL
ERSGLRSWPDDLDTLPRAVQRVVAGRAVRGFPAFADAGATAQLRVFSTEAQQRSALGPGI
RRLLRCDIPSPVKTVERQLDSQTRLMLKANPNGSLAALIDDCADAATDALTPAPVWTRDE
YIALRNRVAAALVPTTADVVTRVAQVLAAARDTQVALPAQAPAGQAEAIADIAGQLDALL
APGFVTATGRAHLGDLTRYLTAIRRRVEQLPRALQADRERMARVQAVQDAYQDLLSALPT
ARHRDNDVRDIARQIQELRVSLWAQQLGTPRPVSEQRIYRAIDALLA
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgcttcgcgaagtggtcgaaccgtccgtcgcgcagctgcgcacgctcctcgacgagctg
accgttcgggacgcggtctatttcggccggcgcctgaaggacctgcgcggcgcaaagccg
gagcagttgcgaaagctggcgcagcggatggacgaggcgcaggcactggtggccgcgcgg
cgcgccgcggtgccggatgtccgctatcccgacctgccggtcagtagccgccgcgacgag
atcgccgcggcgatccgggaccaccaggtcgtggtggtggccggcgagaccggttccggt
aagaccacccagttgcccaagatctgcctggaactgggccgcggtatccgcggcaccatc
ggccacacccagccgcggcggctggccgcccgcaccgttgctcagcgcatcgccgacgaa
ctgggcagcccgctcggcgatgtcgtcgggtatgcggtccggttcgccgaccgggtgtcg
acgcgcacgtgcgtcaaactgatgaccgacggtatcctgctcgccgaactcgaacgggac
cgtcggctgctgcgctacgacacgctgatcatcgacgaggcccacgagcgcagcctcaac
atcgacttccttctcggctacctgcgggagttgttgccgcgccgcccggacctgaaggtg
atcatcacctcggccaccatcgaaccccagcgtttcgcagcgcacttcgcagatgggcac
ggcgggggagcgccgatcgtcgaggtgtccggccgcagttacccggtggaaatccgttat
cgcccattggagctgccggtcgactcggccgccggtgatgacccggacgacccggatcac
gagatcatccgcaccgagacccgcgacgagatcgaggcgatcgtcgacgcggtgcacgaa
ctgtccgccgaaccacccggcgatatcttggtgttcctgtccggcgagcgcgagatccgc
gacaccgcagaggccctcggcggtttggtcaacaccgaggtgctgccgctgtatgcgcgg
ctgtccaccgccgaacagcagaaggtattcgccccggcgcgcgccggcagacggatcgtg
ttggccaccaacgtggctgagacatcgctgaccgtgccgggcatccgctacgtgatcgac
ccgggcaatgcgcgcatctcgcgctacagtcgccggctgaaggttcagcggctgccgatc
gagcccatctcgcaggcctccgccgcccagcgcagcggccggtgcggccgtaccgcgccc
ggggtgtgcatccggctctacagcgaagccgacttcgacacccgcccgcgctacaccgat
cccgaggtgctgcgcaccaacctggccgcggtgctgctgcggatggcgtcgctgcggctc
ggtgcggtggaagacttcggtttcctcgacccgcccgactcgcgcagcatccgcgacggg
gtcgcgctgctggtcgagctcggcgcgttcaatgcgcagggtgcgatcaccgatgtcggg
cgccggctggcccggctgccggtggacccgcggctgggccggatgatcctggccgccgag
accgagggctgtgtgcgcgagatgctggtgctcgtcgccgccctgaccattcccgacccg
cgggagcggccggtcgatcgggaggaggcggcccgggccaagcatgcccggttcgtcgac
gacgattccgacttcaccgcctacctcaacctgtggtcgtatctgtcagagcagcgtaaa
tctctgagcggcagcgcatttcggaggatgtgccgcaatgagttcctgcactacctgcgg
atccgggaatggcaggacctggtgggccagctgcgcagcatcgcagccgatatcggcatc
cgtgaatccggcgagccggcccagccggctgccatccacgccgcactgctggccgggttg
ttgtcgcacgtcggaatgcgacgcgatgacggccgcgagttcgccggcgcgcgcaactcg
aaattcgtgctggcccccggttcggtgctggccaaacgaccaccacgctggacgatggtg
gctgagctggtggagaccagccggctgttcgggcgtaccgctgcgcgcatccaacccgaa
accgtcgagcgggtcgcggcagacctggtgcagcgcagctacagcgaaccgcactgggac
gccaagcgcggcgaggtgatggccttcgaaaaggtgacgctctacgggcttccgctggtg
gcgcgccgccgggtcggctacgcccgagtggagccggcggcggcccgtgaactgttcatc
cggcatgcgctggtggagggcgactgggcaacccggcaccggttcctggccgacaacgcc
gcgctgcgtgaccaactgcaggagctggaagaccgggtccggcgtcgcgacctgatcgtc
gacgacgacaccgtctacgacctctacgaggcccgcattcccgccgaggtggtctcggcg
cggcacttcgacggctggtggaagaagcaacggcaggccacgcccgacctcctgacgttc
acccgcgacgagttgctgcgcaccgacgagacactcggcgccgaccggccggacaactgg
gcgaccgcggatctcgcgttgccgctgacctaccgcttcgagccgggcgccgccgacgac
ggcgtcaccgtccacgtaccgatcgatgtgctggcacgcctcggcggtgacgagttcgcc
tggcaggtaccggcgctgcgcgaagagctgatcaccgcgctgatccggtccctgcccaaa
gatctgcgacgcaacttcgtcccggcccccgacaccgcccgcgcggtgctgtcggcaatc
gggccggaaggcgaaccactgctggaggcgctggtccgcgaactgcgtcgccgcaccggc
gtgctggtgccgatcgacgccttcgacctggccaaactgcccgctcacctgcgggtcacc
ttcgccgtcgaggccgccgacggcaccgaagtggctcgcggcaaagacctcggcgccttg
caggaccgactggcgacgtccgcccgcgaggcggtcgccgatgcggtcggcgccgaactg
gagcgcagcgggctgcgcagctggccggacgacctggacacgttgccgcgcgccgtgcag
cgggtggtggccgggcgcgccgttcgtggcttcccggctttcgccgacgccggcgccacc
gcgcaactgcgggtgttctccaccgaggcgcagcagcggtccgcgctggggcccggtatc
cgccggctgctgcgctgtgacattccttcgccggtcaaaacggttgaacgtcagctggat
tcgcagacacgtctgatgctcaaggcgaacccgaacgggtcgttggcggcgctcatcgat
gactgcgccgacgccgcgaccgacgcgttgacgccggcgccggtgtggacccgcgacgag
tacatcgcactgcggaaccgggtggccgccgcgctggtccccaccaccgccgatgtggtg
acgcgggtcgcgcaggtgctggccgctgcccgggacacccaagtggcgctaccggcgcag
gcgccggccggccaggccgaggcgatcgccgatatcgccggccagttggacgcgctgctg
gcgcccgggttcgtcaccgcgaccggccgggcacatctgggggacctcacccgctatctg
accgccatccgccgccgggtggagcagctgccccgcgcactgcaggccgaccgggaacgg
atggcccgggtacaggcggtgcaggacgcctaccaggaccttttgtcggccctgcccacg
gcgcgccatcgcgacaacgacgtgcgcgacatcgcccgccagatccaagagctacgggtg
agtctgtgggcgcaacagctcggcaccccacgcccggtcagcgaacagcgcatctaccgg
gcgatcgacgcactactcgcttga
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