Methylocystis heyeri: H2LOC_000620
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Entry
H2LOC_000620 CDS
T06290
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mhey
Methylocystis heyeri
Brite
KEGG Orthology (KO) [BR:
mhey00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mhey03016
]
H2LOC_000620
Enzymes [BR:
mhey01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H2LOC_000620
Transfer RNA biogenesis [BR:
mhey03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H2LOC_000620
Prokaryotic type
tRNA splicing ligases
H2LOC_000620
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QGM44322
UniProt:
A0A6B8KA61
LinkDB
All DBs
Position
complement(148860..150116)
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AA seq
418 aa
AA seq
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MQTAADRSYDFLAETFDAAKARNAAPVKMWTRGVPVDDSSKEQLLNTARMPFIFKWLAVM
PDVHYGKGSTIGSVIPTKGAIIPAAVGVDLGCGMMAVRTSLTASDLPDNLALLRAALEKA
VPHGRTVGRDMRDKGSWAELPEATAEAWSALDAGFRRIVEKHPKLEKSNTANHLGTLGTG
NHFIEVCLDEADRVWFMLHSGSRGVGNAIGSYFIERAKEEMRRWYLNLPDRDLAYLPEGT
EGFDDYVDAVQWAQSFALANREVMMKHAIAAAREAMAIPFEAHLEAVNCHHNYVAREHHF
GENVLVTRKGAVCAAEGVMGIIPGSMGAKSFIVRGKGDPESFCSCSHGAGRVMSRAEAKR
RFTIEDHAAATSGVECRKDADVIDETPAAYKDIDAVMAAQADLVEIVHTLRQIVCVKG
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccgccgccgatcgctcttacgattttctcgccgaaacgttcgacgcggccaag
gcccggaacgccgcgcccgtcaaaatgtggacgcgcggcgttccggtggacgactcgtcg
aaagagcagctgctcaacacggcgcgaatgcccttcatcttcaagtggctcgccgtgatg
cccgacgtgcattacggcaagggctcgaccatcggctcggtgatcccgacgaaaggcgcc
atcattccggcggcggtcggcgtcgatctgggctgcggcatgatggccgtgcgcacctcc
ctcaccgcttcggatcttcccgacaatctcgcgctcctgcgcgcggccttggagaaggcc
gtgccgcacgggcgcacggtgggccgggacatgcgcgacaagggctcctgggcggaattg
ccggaagcgacggcggaggcatggtctgcgctcgacgccggcttcaggcgtatcgtcgaa
aagcatcccaagctcgagaaatccaacacggcgaaccatctcggcactctgggcacgggc
aatcacttcatcgaggtctgcctcgacgaagcggatcgcgtctggttcatgctgcattcg
ggctcgcgcggcgtcggcaatgcgatcgggtcctatttcatcgaacgcgccaaggaggag
atgcgacgctggtacctcaacctgccggatcgcgacctcgcctatctccccgagggcact
gaaggattcgacgattatgtcgatgccgtgcaatgggcgcagagcttcgcgctcgccaac
cgcgaggtgatgatgaaacacgccatagcggcggcgcgcgaggcgatggcgattccgttc
gaagcgcatctcgaagcggtcaattgccatcataattatgtcgcgcgcgaacatcatttc
ggcgagaacgtgctcgtgacccgcaagggcgcggtgtgcgcggccgagggcgtgatgggt
atcattcccggctcgatgggcgcgaaatccttcatcgtgcgcggcaagggcgaccccgaa
agcttctgctcctgttcgcatggcgccggccgcgtcatgtctcgcgccgaggcgaagcgc
cgcttcacgatcgaagaccacgccgctgcgaccagcggggtcgaatgccgcaaggacgcc
gacgtcatcgacgagacgcccgcagcctataaggacatcgacgccgtgatggccgcccag
gcggatctggtcgagatcgttcatacgctgcggcagatcgtttgcgtcaaaggttag
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