Methylocystis heyeri: H2LOC_001180
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Entry
H2LOC_001180 CDS
T06290
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mhey
Methylocystis heyeri
Brite
KEGG Orthology (KO) [BR:
mhey00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mhey03016
]
H2LOC_001180
Enzymes [BR:
mhey01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H2LOC_001180
Transfer RNA biogenesis [BR:
mhey03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H2LOC_001180
Prokaryotic type
tRNA splicing ligases
H2LOC_001180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
RecX_HTH2
Motif
Other DBs
NCBI-ProteinID:
QGM44420
UniProt:
A0A6B8KDD0
LinkDB
All DBs
Position
complement(281769..283199)
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AA seq
476 aa
AA seq
DB search
MDRRRFEKLSDNAWRVAPFGAMRVPAVIYASEDLLEEMDDKVFDQTTNVAMLPGIVEASY
AMPDAHWGYGFPIGGVAAFDPQAGGVVSAGGVGFDISCGVRTHLTSLTREEVLSVQEELA
DALYALVPVGVGAEGEVVLDRAAMDAMLTGGARWALEQGFGNAKDLLGIEEGGCIEGAEP
AAVSERAKERQRREMGTLGSGNHYLEVQEVKHIFDPATAAAYGLERGKCVLTIHCGSRGL
GHQIGTEFLREMAVSAQSFGISLPDRELACAPINSELGQRYLGAMRAAINCALANREIVG
HIAREVFARFFGKSELPLMFDVSHNTCKLETHRIGGKDRALFVHRKGATRALGPGSASLP
EPFRQYGQPVLIGGSMGAGSYVLAGVEQSEDRAFSSACHGAGRRLSRHAATRAWSGRQIV
DELRAKGIVVRSPSMRGVAEEAPGAYKDVGAVVDCAEAAGLARKVAYLAPLICIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggatcgccgtcgcttcgagaagctttcagacaatgcttggcgcgtcgctcctttcggc
gccatgcgcgtccctgccgtcatttacgcgagcgaagacctgctcgaggaaatggacgac
aaggtcttcgatcaaacgaccaatgtcgcaatgcttccggggatcgtcgaagcgtcctac
gccatgccggacgcgcattggggctatggatttcccattggcggcgtggcggccttcgat
ccgcaggccggcggcgtggtctcggcgggcggggtcggcttcgatatttcgtgcggcgtc
cgcacccatctcacctcgctcacgcgcgaagaagtcctttcagtccaagaagaactggcc
gatgcgctctatgcgctcgtgcctgtcggagtcggcgcggaaggcgaggtcgtcctcgat
cgcgcggccatggacgccatgctgaccggtggcgcgagatgggcgctggagcaaggtttc
gggaacgcaaaagacctcctcggaatagaagaagggggatgtatcgaaggagccgagccc
gccgcggtctcggaacgggccaaagagcgccaaaggcgcgaaatgggaacgctcggatcg
ggcaatcattatctcgaggttcaggaggtaaagcacatcttcgatccagcgacagccgcg
gcctacggtctcgagcgcggcaagtgcgtcctgaccatacactgcggctcgcgcggtctc
ggccatcagattggaaccgaatttctccgcgagatggcggtctccgcccaaagcttcggc
atttcgctgcccgaccgcgagctcgcctgcgctcccataaattccgagctggggcagcgc
tacctcggcgcgatgcgcgccgcgatcaattgcgcgctcgccaatcgcgagatcgtcggg
cacatcgcgcgggaggtctttgcgcggtttttcgggaaaagcgagcttccgctgatgttc
gacgtttctcacaacacctgcaagctggaaacccatcgcattggaggaaaagatcgcgcg
ctcttcgttcatcgaaagggggcgacgcgcgctctcggcccgggcagcgcgagcctgccg
gagcccttccggcaatatggacaacccgttttgatcggcggcagcatgggcgcgggctct
tatgttctcgcaggggtcgaacaaagcgaggatcgcgccttttcctccgcctgccacggc
gccggacgccgcctcagccggcatgccgcaacccgcgcctggagcggccgccagattgtc
gacgagctgcgcgcaaagggcatcgtggtgagaagtccctcgatgcgcggcgtggccgaa
gaagcgcccggcgcatataaggatgtcggggcggtcgtcgattgcgccgaagccgcaggg
ctcgccaggaaggtcgcctatcttgccccgctgatctgcatcaaaggataa
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