Methylocystis heyeri: H2LOC_002770
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Entry
H2LOC_002770 CDS
T06290
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mhey
Methylocystis heyeri
Pathway
mhey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H2LOC_002770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhey03019
]
H2LOC_002770
03009 Ribosome biogenesis [BR:
mhey03009
]
H2LOC_002770
Enzymes [BR:
mhey01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H2LOC_002770
Messenger RNA biogenesis [BR:
mhey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H2LOC_002770
Ribosome biogenesis [BR:
mhey03009
]
Prokaryotic type
rRNA processing factors
H2LOC_002770
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QGM44696
UniProt:
A0A6B8K9C9
LinkDB
All DBs
Position
637807..640911
Genome browser
AA seq
1034 aa
AA seq
DB search
MANKMLIDASHPEETRVVVLRGNKVQEFDFEAADKKPLRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPVADRIALLEEESRAHRQAEEEEPRPQPQGRLRRSRRRH
SESAEKRSAREDGVMVGSAPDAENFDRFELQAGAEPESSDAPEAIAELLPLETAGEGFEG
FASGDAIESDAVSIEAPTAGEPAFAASPSPETAEAEAPGESEVESDQDEGEQIPGAEPLI
SIDPSGFGTVEVSSSEEIEFAAVEHDHEIKARRQDERDEELERSREESRERPSHDDEHHD
DHDHDHDDEADHVEHIGGDAMEELPFRTPRTRKQYKIQEVIKRRQVLLVQVVKEERGNKG
AALTTYLSLAGRFSVLMPNTARGGGISRKITDGADRKRLKEIVQELEVPEGMGVILRTAG
ATRTKAEVKRDFEYLLRMWENVRELTLRSTAPTLVYEEGSLIKRAIRDLYGRDVDEVIVS
GEESYREARDFMRMLMPSHAKNVKLHRESAPIFAESGVEAQLDAMFSNQVTLKSGGYLVI
NQTEALVAIDVNSGRSTREHNIEDTALRTNLEAADEIARQLRLRDLAGLIVVDFIDMEES
RNNRSVERRIKDALKNDRARIQVGRISHFGLLEMSRQRIRAGVVEGSTVPCPHCSGSGAV
RSTASIALHVLRVLEEALVRSSAHNITLRTRAAVALYILNQKRNHLQDLEQRFGVHITVG
ADDTLTGSTYHALERGELASGVRTPPPQHLRLDSISPEVLEEEAIEEERPIVEAEEAAGP
VQEKVRESGRGAGRFPRQVARQEGGEVEETGAEPPVEGEEEGEGFQRSRRRRRRRGRGGG
NGAINELAQPGAEQPSDDALAFMANIEGTPAPEEGRRAEPRVRRGPGRWMRSTPLAPEFK
EPATFPVDEGEQLSENFVSPTEAHMPPFAEAASEAPALPPASETPAVEAPVSAQAEPTAP
ESVAPVETPPVPAVAAEAPAAAETVEAAPEAPATVVEEVTPRPSTEVVITKADPGQPKKG
GWWQRAKASLGGGD
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaaaatgttgatagacgcctcccacccggaagaaacccgggtggtggtgttg
cgcggtaacaaagtccaggaattcgatttcgaggccgcagacaagaaaccgttacgaggc
aatatatacctcgccaaagtgacgcgcgtggagccttcgctccaggcggcgttcgtcgat
tacggcggcaaccgtcacggttttctggccttcgccgaaatacatcccgactattaccag
atccccgtcgccgaccggatcgccctgctcgaagaagagagcagagcccatcgccaggcg
gaggaggaagaaccccggcctcagccccagggtcgccttcgccgctcgcgccgccggcat
tcggagagcgccgagaagcgttccgcccgcgaagacggcgtgatggtcggctccgccccc
gacgcggagaatttcgaccggttcgagctgcaggccggagccgaacccgaatcgagcgac
gctcccgaggcgatcgccgaactgcttccgctcgagaccgccggggagggtttcgaaggg
ttcgcaagcggggacgcgatcgagtccgacgccgtgagcatcgaagctccgacggcgggc
gagcctgcgtttgccgcaagcccttctcccgaaacggcggaggcagaggctccgggcgag
agcgaagtcgagtctgatcaggacgaaggcgaacagattcccggcgccgagccgctgatc
tcgatcgatccgtcgggttttggcaccgtcgaggtgagctcctccgaggagatcgaattc
gccgcggtcgaacatgatcacgaaatcaaggcgcgtcgccaggacgaacgcgacgaagag
ctggagcggagccgcgaggaaagccgcgagcgtccctctcacgacgacgagcatcacgac
gaccacgatcacgaccacgacgacgaagccgatcatgtcgagcacatcggcggcgacgcg
atggaggagttgccgttccggactccccgcacccgcaagcaatataaaatccaggaagtg
atcaagcgtcgccaggttcttctggtccaggtcgtgaaggaggagcgcggcaacaagggc
gcggcgctcaccacctatctttcgctggccgggcgtttctcggttctgatgcccaatacg
gcgcgcggcggcggcatctcccgcaagatcacggacggcgccgaccgcaagcggctcaaa
gagatcgttcaggaactcgaggtgcccgaaggaatgggcgtcatcctgcgcaccgcggga
gcgacgcgcaccaaggccgaggtcaagcgcgatttcgaatatctgctgcgcatgtgggag
aacgtgcgcgaattgaccctgcggtcgactgcgccgaccctcgtttacgaggaaggctcg
ctgatcaagcgcgcgattcgcgacctctatggccgcgacgtggacgaagtgatcgtctcc
ggcgaggagtcctatcgcgaagcgcgcgatttcatgcgcatgctgatgccgagccacgcc
aagaacgtgaagctgcatcgcgagtcggctccgatcttcgcggaatcgggcgtcgaggcc
cagctcgacgcgatgttctcgaatcaggtgacgctgaaatccggcggctatctggtcatc
aatcagaccgaggcgctggtcgccatcgacgtgaactccggccgttcgacgcgcgagcac
aatatcgaggacactgcgctccgcaccaacctcgaagccgccgacgagatcgcccgtcag
ctgcgactgcgggacctcgccgggctcatcgtggtcgatttcatcgacatggaggagagc
cgcaacaaccggtccgtcgagcgccgcatcaaggatgcgctgaagaacgaccgcgcccga
atccaggtcggcaggatatcgcacttcggcctgctggagatgtcgcgccagcgcatccgg
gccggcgtcgtcgaaggctcgacggtgccctgtccgcattgctcgggctcgggcgccgta
cggtcgacggcctctatcgcgctgcatgttctgcgcgtgctcgaagaggctctggtgcgc
agctccgcgcacaacatcaccctgcgcacccgcgccgcggtcgcgctctatatcctcaac
cagaagcgcaaccatctgcaggatctggagcagcgtttcggggtgcatatcaccgtcggc
gccgacgatacgctgaccggctccacctatcacgcgctggagcggggcgagctggcgtcc
ggcgtccgcacgcctccgccgcagcacttgcggctcgattccatcagccccgaggtgctc
gaagaagaagccatcgaggaagagcgcccgatcgtcgaggccgaagaggcggccggcccc
gttcaggaaaaggtgcgcgagagcggtcgcggcgccgggcggttcccgcgtcaggtcgcg
cggcaagaaggcggcgaggtcgaggaaaccggcgcagagcctcccgtcgagggcgaggag
gaaggcgaaggcttccagaggtcgcgccggcggcggcggcggcgcggaagaggcggcgga
aacggcgccatcaacgagttggcccagccgggcgcggagcagccttcggatgacgcgctc
gccttcatggcgaacatcgaagggacgccggcgcccgaagagggccgccgcgccgaacct
cgcgtcaggcgcggacctggacgctggatgcgttcgaccccgctcgcgcccgagttcaag
gagcccgcgaccttcccggtcgacgagggagagcaattgagcgagaatttcgtctcgccg
accgaagcccatatgccgccattcgccgaggccgcctcggaggcgcctgcgttgccgccc
gcgagtgaaacgccggctgtcgaggcccctgtttcggcgcaggcggaaccgaccgcgccg
gagtccgttgcgccggttgagacgccgccggttcccgccgtcgccgctgaggcgcctgcc
gccgcagagactgtcgaagccgctccggaggcgcctgcgaccgtcgtggaggaggttacg
ccccggccctcgaccgaagtggtgatcaccaaagccgatccgggtcagcccaagaaaggc
ggctggtggcagcgcgccaaggcctcgctgggcggcggcgattga
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