Methylocystis heyeri: H2LOC_003970
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Entry
H2LOC_003970 CDS
T06290
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mhey
Methylocystis heyeri
Pathway
mhey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H2LOC_003970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhey03019
]
H2LOC_003970
Enzymes [BR:
mhey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H2LOC_003970
Messenger RNA biogenesis [BR:
mhey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H2LOC_003970
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
CheB_methylest
Motif
Other DBs
NCBI-ProteinID:
QGM44911
UniProt:
A0A6B8KCU5
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All DBs
Position
complement(893570..894895)
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AA seq
441 aa
AA seq
DB search
MTKFSDLGLAETLLRALDREGYETPTSIQAQSIPLLLQGRDLLGIAQTGTGKTASFALPI
LNRLLADRRRPAPFTARALVLAPTRELAAQIADSFRAYGQFMRPSVGVIVGGVSHRPQVD
MLARGLDVLVATPGRLLDHIASGRFKPAAIEAFVLDEADHMLDLGFIVPIRQIVSKLPKQ
RQTLLFSATMPKEIAGLAQDMLNDPAQVSVTPAATTAERVDQHVFLIDGGAKRNLLVELM
NDAEVSRAIVFTRTKRGADRVAQHLEAAGVGAEAIHGNKSQNQRIRALDGFRSGRTRVLV
ATDIAARGIDVDGVSHVVNFELPEVPEAYVHRIGRTARAGATGRAISLCDNSERPLLRQI
EKLTRQALPFTDRRSEEGRAEEARPERRTPRGGAPKGDVGARNGQQPPRRDGQHRDAPRS
RGARPQQSSNGSRRQRPAYGA
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaattctccgatctcggcctcgccgagacgctccttcgcgctctcgatcgtgaa
ggctatgaaacgcctacctctattcaggcccagtcgatccccctgctcctccagggccgc
gaccttctcggcatcgcccagaccggcacgggaaaaaccgcctctttcgccctgcccatt
ctcaaccggctgctggccgaccgccgccgcccggcgcccttcacggcccgcgctctggtg
ctggcgccgacgcgcgagcttgcggcgcagatcgccgacagtttccgcgcctatggccag
ttcatgcgcccgagcgtcggcgtcatcgtcgggggcgtctcgcaccgtccgcaggtggac
atgctcgctcgcggcctcgatgtactggtcgccacgcccggccgcctgctcgaccacatc
gcctcgggccgcttcaagccggcggcgatcgaggctttcgtgctcgatgaagccgaccac
atgctggacctcggctttatcgtcccgatccgccagatcgtctccaagctgcccaagcag
cggcaaaccctgctgttctccgccaccatgcccaaggagatcgccggcctcgctcaggat
atgctgaacgaccccgcccaggtttcggtcacgcctgcggcgaccaccgccgagcgcgtg
gatcagcatgtgtttctcatcgacggcggagccaagcgcaacctgctggtcgagctgatg
aacgacgccgaggtgtcgcgcgccatcgtcttcacccggaccaagcggggcgcggatcgc
gtcgcgcagcatctggaggccgccggcgtcggcgccgaggcgatccacggcaacaagagc
cagaaccagcgcatccgcgcgctcgacggcttccgcagcggccgcacccgcgttctggtc
gcgaccgatatcgccgcgcgcggcatcgacgtggacggcgtgagccatgtcgtgaatttc
gagctgccggaggttccggaggcttatgtccatcgcatcggccgcaccgcgcgcgccggc
gccaccggccgcgccatctcgctgtgcgacaacagcgaacgccccttgctgcgccagatc
gaaaaactgacgcgccaggcgctgccgttcaccgatcgccgcagcgaggaaggccgcgcc
gaggaagcgagacccgagcgccgcacccccagaggcggggccccgaagggcgacgtcggc
gcccgtaacggccagcagccgccgcgccgggatggacagcatcgcgacgccccgcgctcc
agaggcgcgcgaccgcagcagtcgagcaacggctcccgcaggcagcgccccgcctacggc
gcctga
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